Populus trichocarpa (black cottonwood): 7497628
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Entry
7497628 CDS
T01077
Name
(RefSeq) serine/threonine-protein kinase VPS15
KO
K08333
phosphoinositide-3-kinase, regulatory subunit 4 [EC:
2.7.11.1
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
7497628
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pop01001
]
7497628
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7497628
Enzymes [BR:
pop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
7497628
Protein kinases [BR:
pop01001
]
Serine/threonine kinases: Other
VPS15 family
7497628
Membrane trafficking [BR:
pop04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
7497628
Autophagy
Autophagosome formation proteins
PI3K complex
7497628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS15-like_hel
Pkinase
WD40_Prp19
WD40
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
HEAT
NBCH_WD40
PK_Tyr_Ser-Thr
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
WDR90_beta-prop_4th
HEAT_2
HEAT_EZ
Beta-prop_CAF1B_HIR1
APH
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
7497628
NCBI-ProteinID:
XP_002308305
LinkDB
All DBs
Position
6:13609771..13620210
Genome browser
AA seq
1545 aa
AA seq
DB search
MGNKIARTTQASASEYYLHDLPSSYNLVLKEVLGRGRFFKSILCKHDEGLVLVKVYFKRG
DNIDLTDYHRRLINIKETFRALDHHHVWPFQFFQETDKAAYLLRQYFFNNLHDRLSTRPF
LSLVEKKWLAFQLLLAVKQCHDKGICHGDIKCENVLVTSWNWLYLADFASFKPTYIPYDD
PSDFSFFFDTGGRRLCYLAPERFYEHGGEVQVAQDAPLLPSMDIFAVGCVIAELFLEGQQ
LFELSQLLAYRRGQYDPSQYLEKIPDSGIRKMILHMIQLEPEARLSAESYLQDYAAVVFP
SYFSPFLHNFYCCWNPLHSDMRVAICQSVFHEILKQMMGSRTSEVAGTRRDVFANSLNGK
LSEEMVEKQNLDSTSHWRNRERIENGLTCQQYNLLGDINSLLGDVKQSSGYYSAKLMPES
APGSEFCQDLKQCSTKSPDELLQTISNAFRRNDHPFLKKITVDDLSSLMSEYDSQSDTFG
MPFLPLPEDSMKCEGMVLIASLLCSCIRNVKLPHLRRGAILLLKSCSLYIDDEDRLQRVL
PYVIAMLSDPAAIVRSAALETLCDILPLVRDFPPSDAKIFPEYILPMLSMLPDDPEESVR
ICYASNIAKLALTAYGFLIHSIGLSKAGVLDEMSSPQNSMASFIERPGQLQRVNNDAQLS
QLRKSIAEVVQELVMGPKQTPNIRRALLQDIGNLCCFFGHRQSNDFLLPILPAFLNDRDE
QLRALFYSKIVYVCFFVGQRSVEEYLLPYIDQALSDQTEVVIVNALDCLAILCKRGFLRK
RVLLEMIERAFPLLCYPSQWVRRSAVSFIAASSESLGAVDSYVFLAPVIRPFLCRHPASL
ASEKSLLLCLVPPVSRQVFYHDLENARSSDMLERQRKIWYNSSAQSKQWEPEDLLKGDDK
EPNSMKSWPEKEPSPGDQNHDADRLEQPEDGDAKLIAMGFIANASSKVDIRDALSSEKLQ
FSGCMSPQFSGVNSFLHDKSSEGIPLYSFSMDRRAVKFPPATSDSSLQMNSLAISSSYMP
WVDHGIKSFSLASSVPAPKLVSGSFSITNGSKPFYRVVHEPESRENEQTSFFNGKYQDVG
LYGTSKGSSFTVEDAPPTDLTGLPLFARTASIPDSGWKPRGVLVAHLQEHRSAINDIAVS
SDHSVFVSASDDSTIKVWDSRKLEKDISFRSRLTYHLEGSRALCTVMLHNIAQVVVGACD
GTIHMFSVEHMSRGLGNVVEKYSGIADIKKKDIKEGAILSLLNYTSDNSDGQSVMYSTQN
CGIHLWDIRANSNAWTLKAVPEEGYISSLVTGPCGNWFVSGSSRGVLTLWDLRFLIPVNS
WKYSHVCPVEKMCLFVPPPNVTVTSTARPLIYVAAGSNEVSLWNAETGSCHQVMRVANYD
NEEMSDIPWALARPSSKTNLKLDVRRNVKPKYRVEELNEPPPRFPGIRAMLPLPGGDLLT
GGTDLKIRRWDHFSPDRSYCISGPNLNGAGNDNPYETRSSFGVQIVQETKRRHLTAKLTA
KQVLAAAATDSAGCHRDSILSLASVKLNQRLLISSSRDGAIKVWK
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacaaaatcgcgcggacgacgcaggcatcggcatcagagtactacctgcacgac
ttgccgtcatcgtataatttggtactgaaggaggtgctaggccgaggcaggttcttcaag
tctatactgtgcaagcacgatgagggattagttctggtcaaggtttatttcaagcgtggt
gataacattgatctcaccgactaccaccgccgtctcatcaacatcaaggaaaccttccgt
gctcttgaccatcatcacgtctggcccttccagttttttcaagaaacagataaggcagcc
tatcttttgaggcagtacttcttcaataatcttcatgatcgattgagtactcgtcctttc
ctcagtctcgttgaaaagaagtggttggcatttcagttgcttcttgcggtgaaacagtgt
catgacaagggcatttgtcatggtgatatcaaatgcgagaatgtgctggttacttcctgg
aattggctttatcttgctgacttcgcctcatttaaaccaacttacatcccttatgatgat
ccttcggatttctctttcttctttgacacgggaggaagaaggctctgttatcttgcaccc
gagagattttatgagcatggaggcgaggtgcaagttgctcaagatgcacccctgttgccg
tccatggacatatttgctgtagggtgcgtaattgcggaactttttcttgagggtcagcaa
ctgtttgaactctcccagcttcttgcttatcgtagaggacaatacgatcctagccaatat
cttgaaaagatcccagattctggaatccgcaagatgatacttcatatgatccagttggag
cctgaggcacgtctttctgctgaaagctacctacaagattatgcagctgttgtgtttcca
agctacttctcaccctttctgcataatttttactgctgctggaatccacttcattctgac
atgagggttgcaatatgccagagtgttttccatgagatacttaagcaaatgatgggaagc
aggacaagtgaggtggctggcaccagacgagacgtgtttgcaaatagtttgaatggaaaa
ctatcagaagagatggttgaaaaacaaaacttggactcaacaagtcattggagaaacaga
gagagaatagaaaatggtttaacttgtcaacagtacaatcttcttggagatatcaatagc
ctgctcggggacgtaaaacaaagcagtgggtattatagtgcgaaattgatgcctgagagt
gctcctggttctgaattttgccaggatctaaagcaatgcagcaccaaatctcctgatgag
cttcttcaaactatctcaaatgcatttaggagaaatgatcatccatttctgaaaaaaatt
acagtggatgatttgagttcattgatgtccgagtatgacagtcaatcagatacctttggt
atgccttttttaccgttacctgaagatagcatgaaatgtgaaggtatggttctgattgcc
tctctgctatgctcttgcatacgtaatgtcaagttgccacatttgaggagaggagctata
cttttattgaagtcttgttcattatatattgatgatgaagatcgcttacagcgtgtgctg
ccatatgttattgcaatgctttcggatccagcagcaatagtgcgttctgctgccttggaa
accttgtgtgacattctgcctttagttcgtgattttcctcctagtgatgcaaagattttc
cctgagtatattcttccaatgctttccatgcttcctgatgatccagaggaaagtgtgaga
atatgttacgccagcaatatagcgaagctggctttaactgcttatgggttcttgattcat
tcaataggcttgagcaaggcaggtgttcttgatgaaatgagctcaccacagaattcaatg
gcatcatttattgaaagacctgggcagctgcagagagtaaataatgatgcgcagttgtca
cagctgaggaaatcaattgctgaggttgttcaggaacttgtcatgggtccaaaacaaact
ccaaatatcaggagagcactccttcaggacattggcaatctgtgctgcttctttggccac
agacaaagcaatgactttctgttaccaatccttcctgcatttctcaatgatcgagatgag
caactaagggcattattctatagcaagattgtatatgtctgcttctttgtgggccaaaga
agtgtggaagaatatcttttaccttacattgatcaggctttaagtgatcaaactgaggtt
gtcattgtaaatgcattggactgcttggcaattttgtgtaaacgcggcttcctacggaag
cgggtattgcttgaaatgatagagcgtgcctttccattgttatgctatcctagtcaatgg
gttagaaggtcagctgtctctttcattgctgccagcagtgaaagtttaggagcagtagat
tcatatgttttcctagcaccagttatacgcccgttcctttgcagacatccagcttctcta
gcttcagagaagtctctacttttatgtttggttcctccggtttcaagacaggtgttttac
cacgacttagaaaatgcccggagttcagacatgttagagagacagagaaaaatatggtac
aattcatcagcccagtcaaaacaatgggaacctgaggatttgctcaagggagatgataag
gaaccgaattcaatgaagagttggcctgaaaaggaaccaagtcccggggatcaaaatcat
gatgctgatagattggaacagccagaggatggtgatgcaaagttaatagctatgggcttt
atagccaatgcttccagcaaagttgacattcgtgatgccctgagctcagagaagttgcaa
ttctcaggttgtatgtcccctcagtttagtggtgtgaatagctttttacatgataaatcc
tcagaaggcatacccttatactcctttagcatggacaggcgagcagtaaaatttcctcca
gcaacgtctgattcttcgttgcaaatgaattcccttgcaatcagttcatcatacatgccc
tgggtggatcacggaattaaatcatttagcctggctagttctgttcctgcacctaagctg
gtttcaggttcatttagcattactaatggttctaaaccattttatagagtggtacatgaa
ccagaaagcagagaaaatgagcaaacatcattctttaatggtaaatatcaagatgtggga
ttatatggaacttcaaaaggaagttcttttacggtggaagatgcccctccaactgatcta
actggattgccgttatttgcacggactgcttcaattcctgattcaggttggaaacctcgt
ggggtgttggttgcgcacttgcaggagcaccggtctgccatcaatgacattgcagtttca
agtgatcatagcgtttttgtgagtgcatctgatgattcaactatcaaggtgtgggattca
agaaaattggagaaggacatctcatttagatcaaggctaacttatcacctggaggggagt
cgagcgctatgcactgttatgcttcacaacatagctcaagttgttgttggagcatgtgat
ggcacaattcatatgttttctgttgaacacatgtccagaggccttggtaatgttgttgag
aagtattcagggattgctgatataaaaaagaaggatatcaaggaaggtgccattcttagt
cttttgaactacaccagtgataacagtgatggccagagtgttatgtacagcacccaaaat
tgtgggatccatctctgggatatcagggccaattcaaacgcctggacattaaaagcagtt
cctgaggaaggctacatatcatctctggttacaggtccttgtggaaactggttcgtctca
ggctcttccaggggtgtgctaacactttgggatctgaggttccttatccctgtaaactca
tggaagtattctcatgtatgccctgtagagaagatgtgcctctttgttcctcctccaaat
gtcactgtaaccagcactgcaagaccactcatatatgttgctgcagggtctaatgaagtt
tctctttggaatgctgagactgggagctgccaccaggtcatgagggttgcaaattatgac
aatgaagaaatgtctgatataccatgggccttggccaggccatccagtaagacaaatctt
aaactagatgtgaggcggaatgtcaaaccaaagtacagagttgaggagcttaatgaacca
cctcctcgttttcctggtattcgtgcgatgcttcccttgccaggtggtgatttgttgact
gggggaactgatttgaagatacgtagatgggaccatttcagccctgaccgaagctattgt
atttctgggccaaatttgaatggagctgggaatgataatccgtatgaaacaaggtcgagt
tttggagtgcaaattgtacaggagacaaaaaggcgacatttaacagccaagttgacagcg
aagcaagttcttgcagctgcagctactgattctgctggttgccaccgagattccatcctc
tcattggcttctgtcaagttgaaccagagacttctgatttcaagtagcagagatggggct
atcaaggtttggaagtaa
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integrated database retrieval system
