KEGG   Populus trichocarpa (black cottonwood): 7498106
Entry
7498106           CDS       T01077                                 
Name
(RefSeq) uncharacterized protein LOC7498106
  KO
K12857  Prp8 binding protein
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7498106
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    7498106
Spliceosome [BR:pop03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    7498106
 Complex C
   U5 SnRNP specific factors
    7498106
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st EIF3I WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 ANAPC4_WD40 NBCH_WD40 Beta-prop_SCAP Beta-prop_SPT8 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_DCAF12 Beta-prop_NWD2_C Beta-prop_RIG_1st PEP5_VPS11_N RMC1_N Beta-prop_IP5PC_F Beta-prop_NUP159_NUP214 Nbas_N
Other DBs
NCBI-GeneID: 7498106
NCBI-ProteinID: XP_052305287
LinkDB
Position
19:complement(13444403..13447810)
AA seq 345 aa
MQVVPRESESALSVSGPRPMEWSTVPYTGSQGPGHNGKQRRSSLESPIMLLTGHQSAIYT
MKFNPAGNVIASGSHDKEIFLWYMHGECKNFMVMRGHKNAVLDLHWTADGSQIISASPDK
TVRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTSKLWDLRQKGAIQTFP
DKYQITAVSFSDASDKIFTGGIDNDVKVWDIRKGEVTMTLEGHQDMITSMQLSPDGSYLL
TNGMDNKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSADRMVYI
WDTTSRRILYKLPGHAGSVNECVFHPTEPIIGSCSSDKQIYLGEI
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgcaagttgtgcctagggagagtgaaagtgctttgtctgtctccggtccaaggccaatg
gagtggtctactgttccatatacagggtcacaaggacctggacataatggtaagcagcgt
agatctagcttggaatcacctatcatgttgcttactggtcaccagagtgctatatatact
atgaagttcaatccagctggaaatgtcattgcatcgggatctcatgacaaggaaattttt
ctgtggtacatgcatggggaatgcaaaaacttcatggttatgagagggcacaaaaatgca
gttttagatcttcattggactgctgatgggtcccagataatatcagccagtcctgacaaa
actgtcagggcatgggatgtcgagaccggaaaacagataaagaaaatggcagaacactcc
tcttttgtgaattcatgttgcccttcccgtagggggcctccacttgttgtaagtggatct
gatgatggaacttcaaaactttgggatttgcgccagaagggtgccatccaaacatttcca
gataaataccaaatcacagctgtcagtttctctgatgcatcggataagatattcacaggt
ggtatagataatgatgtcaaggtatgggacatccgcaagggtgaagtgaccatgacactt
gagggccatcaagatatgataacaagtatgcagttgagtcctgatggctcatatctgctt
acgaatggcatggacaacaagctttgcatttgggacatgcgcccctatgcaccacaaaat
cgatgtgtaaagatttttgaagggcaccaacacaactttgaaaagaacttgttaaagtgt
agctggtcaccagatggaagcaaggtcactgctggtagtgcagatcgcatggtttacata
tgggacacaacttctcgacgcatcttgtataagcttcctggtcacgctggatctgtcaat
gagtgtgtcttccaccctactgagcctatcattggatcatgcagcagtgacaaacagatt
tatcttggggaaatctga

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