Populus trichocarpa (black cottonwood): 7498107
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Entry
7498107 CDS
T01077
Name
(RefSeq) ion channel CASTOR isoform X1
KO
K21866
ion channel POLLUX/CASTOR
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pop02000
]
7498107
Transporters [BR:
pop02000
]
Other transporters
Pores ion channels [TC:
1
]
7498107
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Ortholog
Paralog
GFIT
Motif
Pfam:
Castor_Poll_mid
Slo-like_RCK
TrkA_C
Paratox
Salp15
Motif
Other DBs
NCBI-GeneID:
7498107
NCBI-ProteinID:
XP_024447374
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Position
19:13449536..13456267
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AA seq
933 aa
AA seq
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MSLDSQDSTSPSFNRDWFFPSPSFIHQSPPKPPKPHRRFSTASKHSPGSNISNPPSFRSS
PSLSPTTTSKYGRLRRRVELPRPPDKYSIQHQNDSVLDRKPAVSSEKKQSTVKVSSGSLG
HRVRVRWNLAITVAIVITALTSLVHKNFTLHNQVIVLQDQILKLNVRLRACNLLSNVDTF
DSVMQELDDIGYGSDNGLKNLALIVSVTLLSIPVLAFKYIDFVSKSRSSDSVSEEALLNK
QLAYRVDIFLSVHPYAKPLALLVATLLVICLGGLALFGVTDDNLADCLWLSWTFVADSGN
HANTEGIGPRLVSVSISFGGMLIFAMMLGLVSDAISEKFDSLRKGRSEVVEQNHTLILGW
SDKLGSLLNQLGIANESLGGGIVVVMAERDKEEMEMDIAKMEFDFKGTSVICRSGSPLIL
ADLKKVSVSKARAIVVLAEDGNADQSDARALRTVLSLTGVKEGLKGHIVVELSDLDNEVL
VKLVGGDLVKTVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCEFYIKRWPQLHGMQFE
DILISFPDAIPCGIKVASCDGKIILNPEDSYVLQEDDEILVIAEDDDSYAPAALPTVKEA
SFMHIARPARMPQKILLCGWRRDIDDMIVVSSFVKPLIFLFFAWMLQVWRGSLPKDFIGP
KSAEKILFCGWRRDMEDMIMVLDAFLAPGSELWMFNDVPENEREKKLIDGGLDLSRLENI
QLVNREGNAVIRRHLESLPLQSFDSILILADESVEDSAIQADSRSLATLLLIRDIQSKRL
PMVNQVRRGTFSQGSWIGEMQQASDKSVIISEILDPRTKNLLSMSKISDYVLSNELVSMA
LAMVAEDQQINDVLEELFADEGNELQIRQADLYLSEGEELSFYEVLLRARQRREIVIGYR
AANAEKAVINPPAKSERRRWSLKDVFVVIAEKE
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttgactcccaagactctacttctccttccttcaacagggactggttcttccct
tcaccttccttcatccaccaatcacctcctaaacctcctaaaccccaccgcagattctcc
actgcttccaaacattctccaggttccaacatctccaatcctccctcgtttcgttcatca
ccctctctctctcccaccaccacttctaaatatggaagacttcgccggcgcgtggagtta
cctcgaccacctgataaatattcaatacaacaccaaaatgactccgttttggaccgcaaa
cctgctgtttccagtgagaagaagcagtctactgtgaaggtttcttctgggtcattgggc
catcgggtcagagtccgatggaatttggccattacagtagctattgtgattacagctttg
acttcattagtgcacaagaattttactttacataaccaagtaattgttttgcaggatcaa
atactgaaactaaatgttagattacgagcgtgtaatttgttatccaatgtagatactttt
gattcagttatgcaggagcttgatgatattggttatggtagtgataacgggttaaagaat
ttggctttgattgtttcagttacgctattatctattccggttcttgctttcaagtacatt
gattttgtatcgaaatccagatcatcggatagtgtttcggaagaggcgttgttgaataag
cagcttgcatatcgggtggatatttttttatcagttcatccatatgccaagcctttggcg
ttgttggttgcgacattgctggttatttgccttggtggattggcgttgtttggtgtgaca
gatgataatttagcggattgtctttggttgtcttggacgtttgtagcggattcaggcaat
catgctaataccgaggggattggtccaaggcttgtttctgtttctattagctttggtggg
atgcttatttttgctatgatgcttggacttgtgtctgatgctatttctgagaagtttgat
tcattaaggaaaggaagaagcgaagtggttgagcaaaaccatactctaattcttggctgg
agcgataaactaggatcactgctgaatcaacttggaatagccaatgagagtttgggtgga
ggaattgtagtagtgatggctgaacgagacaaagaagagatggaaatggatattgctaaa
atggagttcgacttcaaaggaacatctgtcatatgcagaagtgggagccccctaattctg
gctgacctaaaaaaggtatctgtctccaaggcccgtgcaatagttgtccttgctgaagat
ggaaatgctgaccagagtgatgctcgcgcattgagaaccgtcttaagtcttacaggagtg
aaagaaggtctaaaagggcacattgtggtggagctaagtgatcttgacaatgaggttctt
gtgaaacttgttggtggagatcttgtcaaaactgttgtagctcatgatgttattggccgc
ttgatgattcaatgtgctcggcagccaggacttgcacagatatgggaagacatacttggg
tttgaaaattgtgagttttacatcaaaagatggccgcagttgcacggcatgcaattcgag
gacatactaatcagttttcccgacgctataccttgtgggatcaaggttgcttcttgtgat
ggtaaaattatcttaaatcctgaagactcgtatgttcttcaagaagatgatgaaatcctt
gtcattgcggaagatgatgatagctatgctccagcagcattacctacggtcaaagaggca
tcattcatgcacattgcccgacctgcaagaatgccacagaagattctactttgtggatgg
aggagggacattgatgatatgattgtggtaagctcttttgtgaagcccctaatctttctt
ttcttcgcctggatgctgcaggtatggagaggaagtctacccaaagactttattggtcca
aagtctgcagaaaagatattattctgtggttggagacgtgacatggaagatatgattatg
gtgttggatgcatttctagcaccaggttcagagctctggatgttcaatgatgttcccgaa
aatgagagggaaaagaagctcattgatggtggtctagacttaagtagattggaaaatata
caacttgtcaatcgagagggaaatgcggtcataagacgtcatttagaaagccttcctttg
caatcttttgattcaattttaattttggctgatgagtcagtggaagattcagccattcaa
gccgactcccgatctcttgccacattattattgattcgtgatattcagtcaaagcgtctc
ccaatggtaaaccaggttcgcagaggaaccttctctcaaggttcgtggattggggagatg
cagcaggcttcagataaatctgtaataataagtgaaattctggacccaagaactaaaaat
ttattatccatgtcgaagatcagtgattatgttttatcaaatgaacttgtcagcatggca
ttggccatggttgcagaagatcaacaaataaatgatgtattagaagagctctttgcagat
gagggaaatgagctacaaataaggcaagcagatctttacctcagtgaaggcgaggaattg
agtttctatgaagtactattacgagcacgacagagaagagagatagtcattggttaccgt
gcagctaatgctgaaaaggctgttatcaatccgcctgccaaaagtgagagacgtaggtgg
tcactgaaagatgtcttcgtggtaattgcagagaaggaatga
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