Populus trichocarpa (black cottonwood): 7498215
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Entry
7498215 CDS
T01077
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7498215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7498215
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
7498215
Spliceosome [BR:
pop03041
]
Complex C
Other components
Step II factors
7498215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_30
PhoH
T2SSE
FtsK_SpoIIIE
TsaE
Reprolysin
ABC_tran
NB-ARC
Motif
Other DBs
NCBI-GeneID:
7498215
NCBI-ProteinID:
XP_024463495
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All DBs
Position
8:6027611..6034436
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AA seq
731 aa
AA seq
DB search
MPSMEQNGPRNTTQTRKQKPVLKLSNQPRCAADAISRREIVKKQRESLPIASVKERLVQE
VKNHDVLIIVGETGSGKTTQLPQFLFNAGFCSNGKVIGITQPRRVAAITVAKRVAEECGV
ELGLKVGYSIRFDDKTSSSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDV
LLGLLKNVQRARLKSVIDHAVVSNKKASNGITKENEKGAECTNFLKQCQRKFPPLKLIIM
SASLDARLFSEYFGGARAVHVEGRQHHVDIFYTLHAETDYVDAALITIFQIHLEEGPGDI
LVFLTGQEEIEGVERLVQEQLQKLPEESRKLVTAPIFSSLPSEQQMRVFMPAPAGHRKVI
LATNIAETSVTIPGIKYVIDPGFIKARSYDPVKGMESLIIIPTSKAQALQRSGRAGREGP
GKCFRLYPESEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFLEKPSRAAIQKS
LEELFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALILASQFNCLEEMLIAVSMLSVES
IFYNPREKSEEAKTAKKCFASPDGDHLTLINVYRAADELLQKRRMELGIEKNEKNIKGKN
EKILRKWCRENFINSRSLRHACDIHSQIRGHVEQMGLPISSCGDDTLQFRRCLAASFFLN
AALKQPEGTYRALASGQVVQIHPTSVLHQSKVECVIFDELVQTSQKYIRNTTRIDYLWLT
ELAPHYYAMQG
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatggagcagaatggtcccagaaacacaacacaaactcgaaaacaaaaacca
gtcctcaagctctccaatcaacctcgctgcgccgccgatgctatttccaggagggaaata
gttaaaaaacagagagagtctctaccaattgcttcagttaaggaacgacttgtccaggag
gttaaaaaccatgacgttttaatcatcgttggtgaaaccggaagcggaaaaacaactcag
ttgcctcagtttctatttaatgctgggttctgttccaatggaaaagttattgggataaca
caacctaggcgtgtggcggctatcacggttgctaaaagagttgcagaggaatgtggtgtt
gagttgggtctaaaggttggatattccatcagatttgatgataagacttccagctcaaca
aggatcaagtacatgaccgatggattgttgctgagggaagcattattggatccatatctc
tctaggtattcagtaataattgttgatgaagctcacgagagaactgtccacaccgatgtg
ttactgggcttgctgaaaaatgtgcagagagcaaggttgaaatctgtcattgaccatgct
gttgtcagtaataagaaggccagcaatggtataacgaaggagaatgaaaaaggagccgaa
tgcaccaattttctcaagcagtgccaaaggaaatttccaccattgaagttaataatcatg
tctgccagtttggatgcgcgtcttttctcagagtactttggtggtgccagagctgttcat
gttgaaggccgtcagcatcatgtggatatattttatacacttcacgcggagacagattat
gtagatgcagccttgattaccatattccagatccacttggaggagggcccaggtgatatt
cttgtgttcctaactgggcaagaagagattgaaggtgttgagagacttgtacaggagcaa
cttcaaaagttaccagaagaaagtcgaaagttggtaactgctccaatattttcatctctt
ccatcagaacagcaaatgcgagttttcatgccagctccagctggacatcgtaaggtgata
ttggcaacaaatattgctgagacgtcagtgactatacctggaatcaaatatgttatagat
cctggattcataaaagcacgttcttacgatccggtcaaagggatggaatcattgataatt
attccaacatcgaaagcccaggctcttcaaaggagtggacgtgcaggccgtgaaggacca
gggaagtgctttcgactctacccagagagtgaatttgagaagcttgaggattcaacaaag
ccagagatcaaacggtgcaacctctctaatgttattttgcagctcaaggctctaggcgtt
gatgatattataggatttgatttcctggaaaaaccatcaagggcagctattcaaaaatcg
ttggaggagctgtttctgctgggtgctttgacagatgactgtaagttgtcggatcctgtt
gggcatcaaatggctcggcttcccttagaccctatttattccaaagctctcatccttgct
agtcagttcaactgcttggaagaaatgttgatagctgtttcaatgctctctgtggaatct
attttttataatcctcgtgagaagtcagaagaggcaaaaactgcaaagaagtgttttgca
agtccagatggtgaccaccttactttgattaatgtttatcgcgctgctgatgaactctta
cagaagagaaggatggagcttggtatagaaaaaaatgagaaaaatattaaaggaaaaaat
gaaaagatactgagaaaatggtgcagggaaaattttattaatagtcgctcactgaggcat
gcttgtgacattcacagtcagattagaggacatgttgaacagatgggtcttcctatttct
tcttgtggagatgacactcttcaattccgtagatgccttgctgcttcatttttccttaat
gcagctttgaagcaacccgagggaacatacagggctttagcaagtggtcaagtagtgcag
atccaccctacttctgtgttgcaccagtcaaaggtggagtgtgtaatttttgatgaacta
gtccaaacaagtcagaagtacattcgcaacacaactagaattgattatttgtggttgact
gagcttgctcctcactattatgcaatgcagggttga
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