Polymorphobacter sp. PAMC 29334: KZX46_13455
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Entry
KZX46_13455 CDS
T07387
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
poq
Polymorphobacter sp. PAMC 29334
Pathway
poq03410
Base excision repair
poq03430
Mismatch repair
poq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
poq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KZX46_13455 (recJ)
03430 Mismatch repair
KZX46_13455 (recJ)
03440 Homologous recombination
KZX46_13455 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poq03400
]
KZX46_13455 (recJ)
DNA repair and recombination proteins [BR:
poq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KZX46_13455 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KZX46_13455 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KZX46_13455 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
QYE33833
LinkDB
All DBs
Position
complement(2042212..2043984)
Genome browser
AA seq
590 aa
AA seq
DB search
MSHVFNVTASVLGQPWQWRGGIAPGSGAAGGIDDLIEQLFRARGAAAVDLDRLRSAKLRD
WLPDPSIFRDMDAAAARIAAAIRAAEPVVVFGDYDVDGATSAALLIRLIRDCGGIASAYI
PDRLLEGYGPSPAAMVALAGTGATLIVTVDCGTQGFDALAAAKAAGVEVIVVDHHQASTA
LPPAVAVVNPNRLDETEGAAFGHLAAVGMAFIVAVAVVRTLRADGWFIDRTAPNLLDLLD
LVALGTVADVVPLTGLNRAFVAQGLKVMAARRNLGLAALSAVAGIERAPLARDLGFALGP
RINAGGRVGKSDLGVRLLTTLDPDEAATLAAELDRLNVERRAIEATVTDEAALLTDRTGN
AAVAVIASGGWHPGVIGIVASRLKDKLKRPVIVIALEAGPDGGMIGKGSGRSVPGVDLGG
AILAAKDMGLLIAGGGHAMAAGLTIDASRIDELAVFLDERLGGDVGRSSGGRALFVDAAL
SPRGVCIELTEVLDVGGPYGQGWPAPRVASGPWRVAKVDIVGDNHVRAILTGGDGARIKA
MAFRSGDTPLGLALASAAGRWCFVSGRVQRDDWGRTPAAELHLDDLAWVD
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcatgtcttcaacgtcaccgcctcggtcctcggacagccgtggcagtggcgtggc
ggaattgcgccgggcagcggtgcggcaggcgggatcgacgacctcatcgagcagctgttt
cgcgcacgcggcgcggcggcggtcgacctcgaccggctccgctcggcgaaactgcgcgac
tggctgcccgacccgtcgatcttccgcgacatggacgccgccgccgcgcgcatcgccgcc
gcaatccgcgccgccgaaccggtcgtggtcttcggcgattacgacgtcgacggcgcgacg
agcgcagcgctgctgatccggttgatccgcgactgcggcggcatcgccagcgcctacatc
cccgaccggctgctcgaaggttacggcccctcccccgccgcgatggtcgcgctggcagga
actggcgcgacgctgatcgtcaccgtcgattgtgggacgcaggggtttgacgcgctcgct
gccgccaaagccgccggggtcgaggtgatcgtcgtcgaccaccatcaggcgtcgaccgcg
ctgccccccgccgtcgccgtggtcaacccgaaccgcctcgacgagaccgagggcgcggcg
tttggccatctcgcggcggtcggcatggcgttcatcgtcgcggtcgcggtggtgcggacg
ttgcgcgccgacggttggttcatcgaccgcaccgcacccaacctgctcgacctgctcgat
ctcgtcgcgctcggcactgtcgccgacgtcgtcccgctgaccggactcaaccgcgctttc
gtcgcgcaggggttgaaggtcatggccgcgcggcgcaatcttggcctcgccgcgctgtcg
gcagtcgccgggatcgagcgtgcccccctcgcccgcgatctcggctttgcgctcgggccg
cggatcaatgccggggggcgggtcggcaagtccgacctcggcgtccggctgctgacgacg
ctcgaccccgacgaagccgccaccctcgccgccgaactcgaccgccttaatgtcgaacgc
cgcgcgatcgaagcgacggtgaccgacgaggcggcgctgctcaccgaccgcaccggcaac
gccgcggtcgcggtgatcgccagcggcggctggcaccccggcgtcatcggcatcgtcgcc
agtcgcctcaaggacaaactcaagcgccccgtaatcgtcatcgccctcgaggccgggccc
gacgggggcatgatcggcaagggatcggggcggtcggtacccggggtcgacctcggcggc
gcaatcctcgcagcgaaggacatggggctgctgatcgcgggcggcggccacgcgatggcg
gcggggctgacgatcgacgcgagccggatcgacgagctggcggtattcctcgacgagaga
ttgggcggcgacgtcgggcgatcgagcggaggccgagcgctcttcgtcgacgccgcgctc
agcccgcgtggggtgtgcatcgaattgaccgaagtcctcgatgttggcggaccgtacggc
cagggctggcctgcaccccgcgtcgccagcggcccgtggcgcgtcgccaaggtcgacatc
gtcggcgacaaccacgtccgcgcgatcctgaccggcggcgacggcgcgcggatcaaggcg
atggcgttccgctcgggcgacaccccgctcggcctggccctcgcgagcgccgccggacgc
tggtgcttcgtctccggccgcgtccagcgcgacgactggggccgcacccccgcggccgaa
ctccaccttgacgatctggcatgggttgactag
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