Pseudomonas oryzihabitans USDA-ARS-USMARC-56511: APT59_01855
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Entry
APT59_01855 CDS
T04267
Name
(GenBank) RNA polymerase subunit sigma-70
KO
K03086
RNA polymerase primary sigma factor
Organism
por
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511
Pathway
por02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
por00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
APT59_01855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
por03021
]
APT59_01855
Transcription machinery [BR:
por03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
APT59_01855
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ALZ83007
UniProt:
A0A0U4P2H0
LinkDB
All DBs
Position
complement(399096..400949)
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AA seq
617 aa
AA seq
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MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFET
APDADALLLAETDTDEAAAEEAAAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAQFPGTVDYILSEYTRVTTEGGRLSDVLAGYIDPDDGTLPNESN
ELPVPNKATDAKAVDDEKDEEEESDDADEEEGDGGPDPEEARLRFGAVAEQLEKTKKVLK
KHGRDNDHAVEEFVALALLFSPIKLVPKQYEALVIRVRESLERVRGLERAIMQLAVRDAR
MPRADFLRHFPGNETNTEWTAGLLKGKPKYAEGLERFQADIQAKQAQLAELERNYELKVS
QIKDINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEVAT
SESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEHLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatcccgtctgaaagaattgatcgcccgcggtcgtgag
cagggttacctgacttacgcggaggtcaatgaccacctaccggaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaatgacatggggatcaacgtattcgaaacc
gcgccggacgccgatgccctgctgctggccgagacggataccgacgaagccgccgccgaa
gaagccgctgccgccctggccgcagtggagagcgatgtcggccgcaccaccgacccggtg
cgcatgtacatgcgtgaaatgggcaccgtggagctcctgacccgcgaaggcgagatcgag
atcgccaagcgcatcgaggaaggcatccgcgaagtcatgggcgccatcgcccagttcccg
ggtaccgtcgactacatcctcagcgaatacacccgcgtcaccaccgaaggcggtcgcctg
tccgacgtcctcgccggctacatcgatcccgacgacggtaccctgccgaacgagagcaat
gagctgcccgtcccgaacaaggccaccgatgccaaggccgtggacgacgagaaggacgaa
gaggaagaaagcgacgacgccgacgaggaagaaggcgacggcggtccggatccggaagag
gctcgcctgcgtttcggcgcggtcgccgagcagctggaaaagaccaagaaggtgctgaag
aagcacggccgcgataacgaccacgccgtggaagaattcgtcgccctggccctgctgttc
tcgccgatcaagttggtgcccaagcagtacgaagcccttgtgatccgcgtgcgcgagtcc
ctggaacgcgtccgtggcctcgagcgcgccatcatgcagctggccgtacgcgatgcccgt
atgccgcgtgccgacttcctgcgccacttccccggcaacgagaccaacaccgagtggacc
gctggcctgctcaagggcaagcccaagtacgccgaaggtctcgagcgcttccaggccgac
atccaggccaagcaggcccagctggctgaacttgagcgtaactacgagctgaaagtctcg
cagatcaaggacatcaaccgcgccatgtccattggcgaggccaaggcccgccgcgccaag
aaggaaatggtcgaggccaacctgcgtctggtgatctccatcgccaagaagtacaccaac
cgcggtctgcaattcctcgatctgatccaggaaggcaatattggcctgatgaaggcggtg
gacaagttcgaataccgccgtggctacaagttctccacctatgccacctggtggattcgc
caggccatcacccgctccatcgccgaccaggcgcgcaccatccggattccggtgcacatg
atcgagacgatcaacaagctgaaccggatctcccgccagatgctgcaggagatgggtcgc
gagccgaccccggaagagctgggcgagcgcatggagatgcccgaggacaagatccgcaag
gtgctcaagatcgccaaggaaccgatctccatggagacgcccatcggcgacgacgaggat
tcgcacctgggcgatttcatcgaggacagcaccatgcagtccccgatcgaagtggctacc
agcgaaagcctcaaggaagccacccgcgacgtgctctccggcctcaccgcccgtgaagcc
aaggtcctgcgcatgcgtttcggcatcgacatgaacaccgaccacaccctcgaggaagtg
ggcaagcagttcgacgttacccgcgagcgtatccgccagatcgaagccaaggccctgcgc
aaactgcgccacccttcccgcagcgaacacctgcgctccttcctcgacgagtaa
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