Pseudomonas oryzihabitans USDA-ARS-USMARC-56511: APT59_02880
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Entry
APT59_02880 CDS
T04267
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
por
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511
Pathway
por03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
por00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT59_02880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
por03019
]
APT59_02880
Enzymes [BR:
por01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APT59_02880
Messenger RNA biogenesis [BR:
por03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APT59_02880
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALZ83190
UniProt:
A0A0U4W0C1
LinkDB
All DBs
Position
complement(616801..618681)
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AA seq
626 aa
AA seq
DB search
MSFISLGLSEALARAVEDAGYTNPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPNGHPDGRGYVAKQPRVLVLTPTRELAAQVHESFRVYARDLPMRSACVFGGVGLKP
QVTALAKGVDVLVACPGRLLDLAGQQSVDLSAVEVLVLDEADRMLDMGFIHDVKKVLARL
PAKRQNLLFSATFSKDITDLAGKLLQDPERIEVTPPNTTVERIEQRLFRIPANQKRALLA
HLITLGAWEQVLVFTRTKHGANRLAEYLNKHGLPAAPIHGNKSQNARTKALADFKSNDIR
VLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRNGEAISLVAPDEEKLL
KAIERLTKQSIPDGDMQGFDPQSVPPEQPEVRAPREPRGKPQQNRQKKADKPARSEGQGQ
NQGQGKPATGEQAGAQPQGERKNRTRNRRNRRDRDDAGQDKAAAQPGQAVAQQPRNRDPE
EFLDDAYDNFGNSVDYVSPYQGKGRKGPRSGNGGGAPRPATATGTQGQPRQGQGQGAARG
PRSQQQQQPGKRRGQNGQPRAARPYDAAPSEPRAYASEERTSNKPQPKIVHKPSRADRLP
TLEQLEDLPSRPRSEKPALLTRNREA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcatttccctcggtctctccgaggcccttgcccgcgccgtggaagacgctggc
tatacgaatcccacgcctgttcagcaacgcgccatcccggccgtcctgcagggtcgcgat
ctgatggtggctgcccagaccggtaccggcaagaccggcggcttcgcgctgccggtgctc
gagcgcctgtttcccaatggtcatcccgatggccgtggctatgtcgccaagcagccgcgg
gtgctggtcctgacccccactcgcgaactggcggctcaggtccacgaaagcttcagggtc
tatgcccgcgacctgcccatgcgcagtgcctgcgtcttcggtggcgtcggcctcaagccg
caggttaccgccctggccaagggtgtggacgttctcgtggcctgcccgggtcgcctgctg
gacctcgccggtcagcagagcgtcgacctgtccgccgtcgaagtcctggtgctggacgaa
gctgaccgcatgctcgacatgggctttatccatgacgtgaagaaggtcctggcccgcctg
ccagcgaagcgccagaacctgctgttctcggccaccttctccaaggacatcaccgacctc
gccggcaagctgctgcaggatcccgagcggatcgaggtcaccccgccgaacaccaccgtc
gagcgtatcgagcagcgactgttccgcattccggccaatcagaagcgcgccttgctcgcc
cacctgatcaccctcggcgcctgggaacaggtcctggtgttcacccgtaccaagcacggc
gccaatcgcctggccgagtacctgaacaagcatggcctgccggccgcgccgatccatggc
aacaagagccagaacgcccgcaccaaggccctggccgacttcaagagcaacgacattcgc
gtgctggtcgccaccgacatcgccgcccgcggcctggacatcgatcagttgccccacgtg
gtcaacttcgagctgcccaatgtcgaggaagactatgtacaccgcatcggccgtaccggc
cgggccggacgcaatggcgaggccatctcgctggtggcgccggacgaggagaagctgctc
aaggccatcgagcgcctgaccaagcagagcatcccggacggtgacatgcagggcttcgat
ccccagtccgttccgccggagcagccggaagtgcgcgccccgcgcgaacctcgcggcaag
ccgcagcaaaatcgccagaagaaggccgacaagccggcgcgcagcgaaggccagggccag
aatcaagggcaaggcaagcccgccactggtgagcaggccggtgcccaaccccagggcgaa
cgcaagaatcgcacgcgtaatcgtcgcaaccgccgtgatcgcgatgacgcgggccaggac
aaggctgctgctcagcccggccaggccgtcgcccagcagccacgcaatcgtgatccggaa
gaattcctggacgatgcctacgataacttcggcaatagcgtcgactacgtgagcccctac
cagggtaagggccgcaagggcccgcgcagtggcaacggcggcggtgctccgcgccccgcc
accgcgaccggtacccaaggtcagccccgccaaggccagggtcaaggcgccgcacgcggt
cctcgcagccagcaacaacagcagcccggcaagcgtcgtggtcagaatggtcagccccga
gctgcccggccttatgacgccgcgccgagcgagccgcgtgcctatgcctcggaagagcgg
acgtcgaacaagccgcagccgaagatcgtgcacaagccgtcgcgtgccgaccgcctgccg
accctggagcagctggaagacctgccaagccgcccgcgtagcgagaagcccgcattgctg
acacgcaaccgcgaagcctga
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