Pseudomonas oryzihabitans USDA-ARS-USMARC-56511: APT59_03880
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Entry
APT59_03880 CDS
T04267
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
por
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511
Pathway
por03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
por00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT59_03880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
por03019
]
APT59_03880
Enzymes [BR:
por01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APT59_03880
Messenger RNA biogenesis [BR:
por03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APT59_03880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ALZ83382
UniProt:
A0A0U4W0V9
LinkDB
All DBs
Position
complement(842070..843548)
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AA seq
492 aa
AA seq
DB search
MLKALKKFLGKDQEVAQPTPSPAPQATPSVAPAAPSAPAPAALEPQVERPPRKPRNQNEA
RAQEPRPQADKTAKPRRERSPRKPKPVDTWKLEDFAVEPQEGKTRFHDFKLDPRLMHGIH
DLGFPYCTPIQAEVLGFTLKGKDAIGRAQTGTGKTAAFLISTITQLLTTPPPKERYMGEP
RALIIAPTRELVVQIANDALDLAKYTGLNVMSFVGGMDFDKQLKQLEARYCDILVATPGR
LLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDD
VMNLARQWTTDPAIVEIEPESVASDTVEQHVYAVSSSDKYRLLYNLVAQNNWERVMVFAN
RRDEVRRIEERLTKDGISAAQMSGDVPQHKRIKTLEGFRAGKIRVLVATDVAGRGIHVDG
ISHVINFTLPEDPDDYVHRIGRTGRAGATGTSISFAGEDDSFALPPIEALLGRKIGCEMP
PAELLKPVPRQR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaggcactcaaaaaatttctgggcaaggatcaggaggtcgctcagccgaccccc
tctcctgcgccccaagctacccccagcgtcgctcccgcagctccctccgctcccgccccg
gccgcactcgagccccaggtcgagcggccgccacgcaaaccccggaaccagaacgaagcc
cgcgcccaggagccccgccctcaggcggacaagactgccaagccgcgtcgtgaacgcagc
ccgcgcaagcccaagccggttgacacctggaagctggaagacttcgcggtcgagccgcag
gaaggcaagacgcgcttccacgacttcaagctggatccgcgcctgatgcacggcatccat
gaccttggctttccctactgcacgccgatccaggcggaagtactgggctttaccctcaag
ggcaaggacgccattggccgtgcgcagaccggcaccggcaagaccgctgctttcctgatc
tcgacgatcacccagctgctgaccaccccgccgcccaaggaaaggtacatgggtgagccg
cgggcactgatcatcgcgccaacccgcgagctggtggtgcagatcgccaacgacgccctg
gatctggccaagtacaccggcctgaacgtcatgagctttgtcggcggcatggacttcgac
aagcagctcaagcagctcgaagcacgctattgcgacatcctggtcgccacccccggccgt
ctgctggacttcaaccagcgcggtgaggtgcacctggatatggtcgaggtgatggtgctg
gacgaggccgaccgcatgctggatatgggcttcatcccccaggtccgccagatcatccgc
cagacgccgcccaagagcgaacgccagaccctgctgttctccgccaccttcaccgatgac
gtgatgaacctggcacggcagtggaccactgatccggccatcgtcgagatcgagccggaa
agcgtggccagcgataccgtcgagcagcacgtctacgccgtgtcctccagcgacaagtat
cgcctactctacaacctggtcgcccagaacaactgggagcgggtgatggtgttcgccaac
cgtcgcgacgaggtgcgccgtatcgaagagcgcctgaccaaggacggcatcagcgcggcc
cagatgtccggcgacgtgcctcagcacaagcgtatcaagaccctcgaaggcttccgcgcc
ggcaagatccgcgtgctggtggcgaccgacgtggccggtcgcggcattcacgtcgacggc
atcagccacgtgatcaacttcaccctgccggaagacccggacgactacgtgcaccgcatc
ggccgtaccggccgcgccggtgccaccggtacctccatcagcttcgccggcgaagacgac
tccttcgccctgccacccatcgaagccctgctgggccgcaagatcggctgcgagatgccg
ccggccgagctgctcaagccggtcccgcggcagcgttga
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