Pseudomonas oryzihabitans USDA-ARS-USMARC-56511: APT59_03995
Help
Entry
APT59_03995 CDS
T04267
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
por
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511
Brite
KEGG Orthology (KO) [BR:
por00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
por03019
]
APT59_03995
Enzymes [BR:
por01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
APT59_03995
Messenger RNA biogenesis [BR:
por03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
APT59_03995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
Flavi_DEAD
ResIII
HA2_N
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ALZ83404
UniProt:
A0A0U4WGD3
LinkDB
All DBs
Position
866050..868554
Genome browser
AA seq
834 aa
AA seq
DB search
MTPLPIDVVLPDLRQALARRDDCVLEAPPGAGKTTRVPLALLGEPWLAGQRILLLEPRRL
AARAAAERLAAELGEGVGETVGYRIRLESQVGPRTRIEVVTEGILTRRLQDDPALDGVGL
VIFDEFHERSLDADLALALTLSGRELLRDTPLKVLVMSATLEGERLAALLGDAPVVRSEG
RMFPVTTRWSRPLGQDERLEVRVAATVLQALDEESGSLLVFLPGQAEIRRTAERLADHLP
AAVLLCPLHGELELAAQRAAIEPAPVGSRKVVLATNIAETSLTIEGVRVVVDAGLARVPA
FDPGSGMTRLTTRRISRASATQRQGRAGRLEPGVCYRLWSEELHQQLPAYDSAEILQADL
AGLALQLARWGMSAEELAWLDPPPAAGLAQARDLLMRLGALDDQGVLAPHGQAMSGLPAH
PRLAYLLLRGQAWGLAERACEIAALLGERDLAPGQGADLHTRLLLLAGEGRGPRGGVARI
RQLVRQYRGLLRGKAERPVADPEHPRWTGALLACAYPDRIAQQRKAGGQDYRLANGRAAS
FGEPDGLMKSPWLVVVDLGSRQGQREERIYLAAELDPALFEGPLAEQVVSHDELDWDERE
GVLRAERQRRVGQLVLSREPLKNLDATTRSRALLELVRRKGLELLPWTPELRQWQARVAL
LRQLELQQKQASDWPDVSDAALLASLEDWLLPYLDRVTRLAHFANLDLAAMLQGLLPWPL
PRQLDDLAPRTLAVPSGSNIRLDYGEHPPVLAVRLQELFGLADTPRIAGGRLAVKLHLLS
PARRPVQVTQDLASFWANTYLDVKKDLKGRYPKHYWPDDPLIAEPTARAKPRGT
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccttgcccatcgatgttgtcctgcccgacctgcgccaggccctcgcccgccgt
gatgactgtgtgctggaagcgccgcccggcgccggcaagaccacccgggtgcccctggcg
ctgctgggcgaaccctggctggccggtcagcgcatcctgctgctcgaaccccgacggctg
gcggcccgcgccgcagccgagcgtctggccgcggaactgggtgaaggcgtcggcgagacg
gtgggctatcgcatccgcctggaaagccaggtagggccgcgcacccgcatcgaagtggtc
accgaaggcatcctcacccgccggctgcaggacgatccggcgctggacggtgtcggcctg
gtgatcttcgacgaattccatgaacgcagcctggacgccgatctggccctggcgctgacc
ctgagcgggcgcgagctgctacgcgatacgccgctcaaggtgctggtgatgtccgccacc
ctcgaaggcgagcgcctggccgcgctgcttggtgatgcgcccgtggtgcgtagcgaaggc
cggatgtttccggtcacgacccgctggagtcgaccgctcggccaggacgaacgcctggag
gtgcgggtggccgccacggtgctgcaggcattggacgaggagtccggcagcctgctggtg
ttcctgcccgggcaggcggagatccgccgcaccgccgagcggctggcggatcacttgcct
gctgcggtgctgctctgcccgttgcatggcgagctggagctggcggcccaacgggcggcc
attgagccggcgccagtgggcagccgcaaggtggtgctggccaccaatatcgccgagacc
agcctgaccatcgaaggggtacgggtggtggtggatgcaggtctggcgcgggtgccggcc
ttcgatcccggcagcggcatgacccgcctgaccacccgccgcatctcccgcgcctcggct
acccagcgccagggccgcgccggccgcctagagccgggtgtctgctatcgactctggtcg
gaagaactgcaccagcaattgccggcctacgacagcgccgagatcctccaggctgacctc
gccgggctggcgctgcaactggcccgctggggcatgagcgccgaggagctggcctggctc
gatcccccgcccgccgcgggcctggcccaggcccgcgacctgctgatgcgcctgggtgcc
ctggacgaccagggcgtgctcgcccctcacggccaggccatgagcggtctgccggcccat
ccacggctggcgtacctgctgttgcgtggtcaggcctggggcctggccgagcgcgcctgc
gagatcgccgcactgttgggcgaacgcgacctggcgccggggcagggcgccgacctgcat
acccgtctgctgctcctggccggcgaagggcgcggcccgcgcggcggggtggcgcgcatt
cgtcagctggtccgtcagtaccgcggcctgctgcgtggcaaggccgagcggccggtggcc
gatcccgaacacccgcgctggacgggcgccctgctggcctgcgcctatccggatcgcatc
gcccagcagcgcaaggccggcggccaggactatcggctggccaatggccgggccgccagc
tttggcgagccggatgggttgatgaagtcgccctggctggtggtggtcgacctgggcagt
cgccaggggcagcgcgaggagcgcatctacctggccgccgaactggatccagcattgttc
gaggggccgctggccgagcaggtcgtgagtcacgatgaattggactgggacgagcgcgaa
ggcgtcctgcgcgccgagcgccagcgccgggtcggccagttggtgctgagtcgcgagccg
ctgaagaacctggacgccacgacccgcagccgcgcgctgctggagctggtgcggcgcaaa
ggcctggagctgctgccctggacgccggagttgcgccagtggcaggcgcgggtagccttg
ttgcgccagctggaattgcagcagaagcaggcgagcgactggccggacgtcagcgacgcg
gccctactggccagcctggaagattggctgctgccctacttggaccgtgtcacccgcctg
gcccacttcgccaatctggacttggccgccatgctccagggcctgctgccctggccgctg
ccgcgccagctggacgacctggccccgcgcaccctggcggtaccctccggctccaacatc
cgcctggactacggcgaacacccgccggtgctggcggtgcggttgcaggagctgttcggc
ctggccgataccccgcgcatcgccggcgggcgcctggcggtcaagctgcacctgctttcc
ccggcgcggcgtccggtgcaggtcacccaggacctggccagcttctgggccaacacctac
ctcgacgtgaagaaggacctcaagggccgctaccccaagcactactggccggacgatccg
ctgatcgccgaaccgacggcgcgagccaagccgcgggggacctga
DBGET
integrated database retrieval system
