Pseudomonas oryzihabitans USDA-ARS-USMARC-56511: APT59_06445
Help
Entry
APT59_06445 CDS
T04267
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
por
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511
Pathway
por03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
por00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
APT59_06445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
por03400
]
APT59_06445
DNA repair and recombination proteins [BR:
por03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
APT59_06445
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
APT59_06445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
DnaJ_CXXCXGXG
AAA_29
DUF4350
AAA_16
AAA_15
Motif
Other DBs
NCBI-ProteinID:
ALZ83864
UniProt:
A0A0U4VXV5
LinkDB
All DBs
Position
complement(1435253..1437868)
Genome browser
AA seq
871 aa
AA seq
DB search
MPSSPRPGFVSVRGAREHNLKNVDVDIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYF
ESVAPYARRLIDQVGVPQVEAIEGLPPAVALQQQRGQPNSRSSMGSVTGLSSLVRMLYSR
AGRYPADQPMLYAEDFSPNTPQGACPECHGLGRVYEVTEASMVPDPSLTIRQRAIAAWPT
AWGGQNLRDILVTLGYDVDIPWRDLPQKQRDWILFTEEQPTVPVYAGLTPEQARAALKRK
AEPSYQGTYTGARRHVLHTFANSQSAKMKQRAARFMIGQTCPLCHGKRLTRAALSVTFAG
LDIGELSRLPLDDLSVLLRRVAAGNFDDTQDRGVLDAKAGKQDRARRKAAGGSDHASAPD
VRRTPDLSPEKRLAAQRMATELLERLQTLTRLGLGYLALERSTTTLSSGELQRLRLATQL
VSQLFGVVYVLDEPSAGLHPADGESLLEALDGLKAQGNSLFVVEHDLATMKRADWLVDVG
PAAGEGGGRVLYSGPPAGLAEVAESVTARYLFAAPQRETRPPREPQGWLRLAGVTRNNLQ
GLDAAFPLGCLTAVTGVSGSGKSSLVSQALLELVGAELGQRAAEDGDEAPELDGDALPAT
TGQVVGGLGGIRRLVPVDQKPIGRTPRSNLATYTGLFDGVRKLFAATPEAQERGFDAGRF
SFNVAKGRCPTCEGEGFVSVELLFMPSVYAACPTCQGARYNPETLEVRWQGKTIAEVLGL
TVDEALAFFAEEAPVARALRVLVDIGLGYLRLGQPATELSGGEAQRIKLATELQRTSRGT
TLYVLDEPTTGLHPADVERLMRQLHGLVDEGNTVVLVEHNLQVVAGSDWLIDIGPGAGTA
GGRIVACGTPRAVAEDPASPTAPYLRPLFDA
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgccctcctccccccgtcccggtttcgtctccgtccgcggtgcccgcgagcacaacctg
aagaacgtcgacgtggatatcccccgcgatgccctggtggtgttcaccggggtatccggc
tcgggcaagtcgtcgctggccttcggcaccctctatgccgaggcccagcgccgctacttc
gaatcggtggcgccctatgcccgacggctgatcgaccaggtgggggtgccccaggtggag
gccatcgaaggcctgccgccggcggtggccctgcaacagcagcgcggccagcccaacagt
cgttcgtccatgggcagcgtgaccgggctttccagcctggtgcggatgctctattcccgc
gccggtcgctaccctgccgaccagccgatgctctatgccgaggatttctcgcccaacacg
ccccagggcgcctgccccgagtgccacggcctgggccgggtctacgaggtgacggaagcc
tccatggtgccggacccctcgctgaccatccgccagcgcgccatcgccgcctggcccacc
gcctggggcgggcagaatctgcgcgatatcctggtcaccctgggctatgacgtcgacatt
ccctggcgcgacctgccgcagaagcagcgcgactggatccttttcaccgaggagcagccc
accgtcccggtctatgccggcctcacccccgaacaggcccgcgccgcgctcaaacgcaag
gccgagcccagctaccagggcacctacaccggggcgcggcgccatgtgctgcacaccttc
gccaattcccagagcgccaagatgaagcagcgcgcggcgcgcttcatgattggccagacc
tgcccgctgtgccacggcaagcgcctgacccgggcggcgctctcggtgaccttcgccggc
ctggacatcggcgagttgtcgcggctgccgctggatgacctgagcgtgctgctgcgccgg
gtggccgcggggaatttcgacgacacccaggacaggggcgtgctggacgccaaggccggt
aagcaggatcgcgcccggcgcaaggccgctggcggcagcgatcacgccagtgccccggac
gtgcgccgtacccccgatctctcgccggagaaacgcctggccgcccagcgcatggccacc
gaattgctggaacggctgcagacccttacccgcctgggccttggttatctagccttggag
cgcagcaccactactctttcctccggtgaattgcagcgcctgcggctggccacacagctg
gtgtcccagctgttcggcgtggtctatgtgctggacgagccttccgctggcctgcatccg
gccgatggcgagtccctgctggaagccctcgacggcctcaaggcccagggcaattcgctg
ttcgtggtggagcacgacctggccaccatgaagcgtgccgactggctggtggatgtcggc
cccgcggccggcgaaggcggtggccgggtgctctacagcggtccccccgcgggtctggcc
gaggtcgcggagtcggtgacggcgcgctacctgttcgccgcgccgcaacgcgagacccga
ccaccccgcgagccccagggctggctgcgcctggccggggtcacccgcaacaatctgcag
gggctggacgccgcctttccgctgggctgcctgaccgcggtgaccggcgtctccggttcg
ggcaagtccagcctggtcagccaggcgctgctggagctggtaggcgccgaactgggccag
cgcgccgccgaggacggggacgaagcgccggaactggacggcgacgccctgcccgccacc
accggccaggtggtcggcggcctcggtggcatccgtcgcctcgtgccagtggaccagaag
cccatcggccgcacgccacgctccaacctcgcgacctacaccggcctgttcgacggggtg
cgcaagctgttcgccgccacccccgaggcccaggaacgcggcttcgatgccgggcgcttc
tccttcaacgtcgccaagggccgctgcccgacctgcgaaggcgagggcttcgtcagcgtc
gaactgctgttcatgcccagcgtctacgccgcctgccccacctgccagggcgcgcgctac
aaccccgagaccctggaggtgcgctggcaaggcaagaccatcgccgaggtcctgggcctg
acggtggacgaggccctggccttcttcgccgaggaagccccggtggcgcgggcgctgcgg
gtgctggtcgacatcggcctgggctacctgcgcctgggtcaaccggccaccgaactctcc
ggtggcgaggcccagcgcatcaagctggccaccgagctacagcgcaccagccgtggcact
accctctatgtgctggacgaacccaccaccggcctgcacccggccgacgtggagcggctg
atgcgccaactgcacggcctggtcgacgaaggcaataccgtggtgctggtggagcacaac
ctgcaggtggtggccggcagcgactggctgatcgacatcggtcccggcgccggcacggcg
ggcggccgcatcgtcgcctgcggcacgccgcgcgcagtggcggaggatcccgccagcccc
acggcgccctatttgcggcccttgttcgacgcctga
DBGET
integrated database retrieval system
