Pseudomonas oryzihabitans USDA-ARS-USMARC-56511: APT59_10680
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Entry
APT59_10680 CDS
T04267
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
por
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511
Pathway
por02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
por00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
APT59_10680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
por03021
]
APT59_10680
Transcription machinery [BR:
por03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
APT59_10680
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
PhyR_sigma-like
HTH_23
GerE
HTH_11
RovC_DNA-bd
HTH_Tnp_ISL3
HTH_40
HTH_28
Xre-like-HTH
HTH_24
HTH_69
TnsD
Trp_repressor
HTH_VMAP-M9
HTH_29
HTH_7
HTH_3
HTH_31
HTH_Mga
DUF1804
Sigma54_DBD
HTH_38
HTH_36
HVO_A0261_N
Motif
Other DBs
NCBI-ProteinID:
ALZ84636
LinkDB
All DBs
Position
2311082..2311594
Genome browser
AA seq
170 aa
AA seq
DB search
MSDMALESSRTLQAFYRDHSGWLQAWLRRRLGSEWDAADLSQEAFLRLLRNPQVVAELQE
PRAYLLTIGKRLLINFQRRRSLEQAYLNALAELPEACAPSPEQRWVLLETLQALDELLDG
LPSAVRQAFLLSQLEGLTYREIADQLQVSERTIKRYMAQAYEHCLLAELC
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatatggctctcgagtcctcgcgcaccctccaggcgttctatcgcgaccacagc
ggttggctgcaggcctggttgcgtcggcggctgggcagtgagtgggatgccgccgacctc
agccaggaagccttcctgcggctgctgcgcaatccccaggtagtggccgagctgcaagaa
ccccgtgcctatctgctgaccattggcaaacgcctgctgatcaatttccagcgtcggcgc
agcctggagcaggcctatctcaatgccctggcggaattgcccgaggcctgcgccccgtca
cccgagcagcgctgggtgttgctggagaccctgcaagccctggacgaactgctcgacggc
ctgccatccgcggtgcgccaggcctttctgctcagccagctcgaaggcctgacctatcgc
gagatcgccgaccaactgcaggtctccgagcgcaccatcaagagatacatggcgcaggcc
tacgagcactgcctgctggccgaattgtgctga
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integrated database retrieval system
