Pseudomonas oryzihabitans USDA-ARS-USMARC-56511: APT59_11635
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Entry
APT59_11635 CDS
T04267
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
por
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511
Brite
KEGG Orthology (KO) [BR:
por00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
por03032
]
APT59_11635
03400 DNA repair and recombination proteins [BR:
por03400
]
APT59_11635
Enzymes [BR:
por01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
APT59_11635
DNA replication proteins [BR:
por03032
]
Prokaryotic type
DNA Topoisomerases
APT59_11635
DNA repair and recombination proteins [BR:
por03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
APT59_11635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Choline_bind_3
Motif
Other DBs
NCBI-ProteinID:
ALZ84812
UniProt:
A0A0U4WK77
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All DBs
Position
2508759..2509856
Genome browser
AA seq
365 aa
AA seq
DB search
MQRLAQTDLPVPDDERDDTGTALCTPLPPDLSYVDDSQSGLSRRKLRGKWAYFTPDGERI
RDQAVVERINKLAIPPAYTEVWICPDANGHLQATGRDARGRKQYRYHPRWREIRDTDKYE
RMLAFGQALPKLRQRVEEDLARRGLCREKVMATVISLLDATLIRVGNAQYAKSNKSYGLT
TLRNRHAEVHGNTIAFHFRGKSGVEHNIKVSDPRLARTVKKCRELPGQHLFQYVDADGER
HTVTSSDVNAYLHELTGADFTAKDYRTWAGSALALEALRELRCETQTDAKKELVDMVKAV
SRTLGNTPAVCRKCYIHPGVLDAFLAGDLCTLPKPRKRKGLKEEEVLLLNFLQRLEQRMA
ETQAA
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgtctcgcccagaccgacctgcccgtccccgatgacgagcgtgatgacaccggt
accgctctctgcacccccttgccgcccgacctcagctacgtcgacgacagtcagtcgggc
ctgagtcggcgcaagctgcgcggcaaatgggcctatttcaccccggacggcgagcgcatc
cgcgaccaggccgtggtcgagcgcatcaacaagctggccattccaccggcctataccgag
gtatggatctgtccggatgccaacggccacctgcaggccaccggtcgcgatgctcgcggc
cgcaagcagtatcgctatcacccccgctggcgcgagatccgcgataccgacaagtacgag
cggatgctggccttcggtcaggccctgcccaagctgcgccagcgcgtggaagaggatctc
gcccggcgaggcctgtgccgggaaaaggtcatggctacggtcatcagcctgctggatgcc
accctcatccgcgttggcaatgcccagtacgccaagagcaacaagtcctacggccttacc
accctgcgcaaccggcacgccgaagtccatggcaacaccatcgccttccacttccgtggc
aagagcggcgtggagcacaacatcaaggtcagcgatccgcgcctggcacgtaccgtgaag
aaatgccgggagttgcccggccagcacctgttccagtacgtggatgccgatggcgagcgt
cacaccgtgacctcttccgacgtcaacgcctacctgcacgagttgaccggcgccgacttc
acagccaaggactatcgcacctgggccggcagcgccctggcgctagaagccctgcgtgaa
ctgcgctgcgagacccagaccgacgccaagaaggagctggtggacatggtcaaagcggtg
tcccgcaccctgggcaataccccagcggtgtgccgcaagtgctatatccatccgggtgtg
ctggatgcctttctcgccggcgacctctgcaccctgcccaaaccgcgcaagcgcaagggc
ctcaaggaggaagaggtgctgctgctcaacttcctgcaacgcctggaacagcggatggcg
gaaacccaggccgcctga
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