Pseudomonas oryzihabitans USDA-ARS-USMARC-56511: APT59_11735
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Entry
APT59_11735 CDS
T04267
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
por
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511
Pathway
por03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
por00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT59_11735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
por03019
]
APT59_11735
03009 Ribosome biogenesis [BR:
por03009
]
APT59_11735
Enzymes [BR:
por01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APT59_11735
Messenger RNA biogenesis [BR:
por03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APT59_11735
Ribosome biogenesis [BR:
por03009
]
Prokaryotic type
rRNA helicases
APT59_11735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
TrkA_N
Cas3-like_C_2
TDP-43_C
Motif
Other DBs
NCBI-ProteinID:
ALZ84832
UniProt:
A0A0U4VNM5
LinkDB
All DBs
Position
complement(2529497..2531203)
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AA seq
568 aa
AA seq
DB search
MTQDISNFAALNLNPAILAAIKAVGYEEPSPIQSQSIPVILAGHDMIGQAQTGTGKTAAF
ALPLLSQLDPSRREPQILVLVPTRELALQVATACETYSTEMPGVKVVALYGGAPMGPQLK
SLRMGAQVLVATPGRLCDHLRRDDNLLATVQRLVLDEADEMLKLGFMDDLEFIFEAMPET
RQTVLFSATLPPSIRAIAERHLKEPQHVRIAAKTQTVARIEQAHLMVHADQKPASVLRLL
EVENFDALIAFVRTKQATLDLAELLERQGYRVSALNGDMPQAQREKTIESLKDGSLDIVV
ATDVAARGLDVARITHVLNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQRVGEIRLPDAEAVLEARISRLADGVGSLLADADATHGALRQELCERLQCDPSTL
AAALLAKLTSGRALDLESVRREQPLTPGAGRGERPRGERSERGERPDRGGERGERPDRGE
RRPMQPLPEGRVRCRTALGARDGVAAKNLLGAIINEGGMDREAIGRIQIRDSFSLVELPE
ENLERLLTKLKDTRVAGKALRLRRYRED
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggacatcagcaatttcgctgcgctcaatctcaatcccgccatcctcgccgcc
atcaaggccgtcggctacgaagagccgtcgcccatccagtcgcagtccattccggtgatc
ctcgccggccacgacatgatcggccaggcgcagaccggtacgggtaagaccgcagccttt
gctctgccgctgctctcgcagctcgacccgtcccgtcgtgaaccccagattctggtgctg
gttcctacccgtgaactggccctgcaggtcgctaccgcctgcgaaacctattccaccgag
atgcccggcgtgaaggtcgtggccctctacggcggcgcgcccatggggccgcagttgaag
tccctgcgcatgggtgcccaggtactcgtcgctacccccggccgcctgtgcgaccacctg
cgccgtgacgacaacctgctggccaccgttcagcgtctggtgctcgacgaggccgacgag
atgctcaagctgggcttcatggacgacctcgaattcatcttcgaggccatgccggaaacc
cgccagaccgtactgttctcggcgaccctgccgccgtcgatccgtgccatcgccgagcgt
cacctcaaggagccgcaacacgtccgcatcgcggccaagacccagaccgtcgcccgcatc
gagcaggcgcacctgatggtccatgccgaccagaagccggcctcggtgctgcgcctgctg
gaagtggaaaacttcgacgccctgatcgccttcgtgcggaccaagcaggcgaccctggat
ctggctgaactgctggaacgccagggctatcgcgtcagcgccctgaacggtgacatgccc
caggcccagcgcgagaagaccatcgaatccctcaaggacggttcgctggacatcgtggtc
gccaccgacgtcgcggcccgtggcctggacgtggcgcgcatcacccacgtgctgaacgtg
gacatgccctacgatcccgaatcctacgtgcaccgtatcggccgtaccggtcgtgccggg
cgtgaaggccgcgcgctgctgctggtcaccccgcgcgagcgtcgcatgctgcaggtcatc
gagcgcgtgaccggtcagcgggttggcgagatccgtctgcccgacgccgaagccgtgctg
gaagctcgtatctcccgtctggccgatggcgtgggttcgctgctggccgatgccgacgcc
acccacggcgcgctgcgtcaggagctgtgcgagcgtctgcagtgtgatccttccaccctg
gcggcggcgctgctggccaagctgaccagcggccgtgccctggacctggagtcggtgcgc
cgtgagcagccgctgacccccggcgccggccgtggcgagcgtccccgtggcgagcgcagc
gagcgtggcgaacgccctgatcgtggcggcgagcgcggcgagcgtcccgatcgtggtgag
cgtcgtccgatgcagcccctgccggaaggccgcgtccgctgccgcaccgccctgggcgcg
cgcgatggcgttgctgccaagaacctgctgggtgccatcatcaacgaaggcggcatggat
cgcgaggccatcggccgcatccagatccgtgactccttcagcctggtggagctgcccgag
gaaaacctggagcgtctgctgaccaagctcaaggacacccgcgtggcgggcaaggccctg
cgcctgcgtcgttatcgcgaggattga
DBGET
integrated database retrieval system
