Pseudomonas oryzihabitans USDA-ARS-USMARC-56511: APT59_14010
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Entry
APT59_14010 CDS
T04267
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
por
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511
Pathway
por03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
por00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT59_14010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
por03019
]
APT59_14010
Enzymes [BR:
por01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APT59_14010
Messenger RNA biogenesis [BR:
por03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APT59_14010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ALZ85253
UniProt:
A0A0U4WB77
LinkDB
All DBs
Position
3079039..3080355
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AA seq
438 aa
AA seq
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MTFADLGLIDPLLQALAALEHSSPTPIQRQAIPAVLAGRDLLAAAQTGTGKTGAFGLPLL
QRLVQEGPAVTPNHIRALILTPTRELAEQVHASLHDYARHLPLRTAVAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLFSQNAVRFDQVQLLVLDEADRMLDLGFSRQLGELFVMLPRKR
QTLLFSATFSDAVRQLAAPVLRDPQTIDVSPRNTAAVTVKQWVVPVDKKRKTELFLHLYR
SGPRQQVLVFAKTRKGVEQLVEVLQAEGLAAESIHGDKPQPARLRALARFKAGEADILVA
TDVAARGLDIQDLPLVVNLDLPIVAEDYVHRIGRTGRAGNQGQAVSLVCADEVDQLAAIE
TLIGQVLPRRDEPDFIPDHRVPETRPNGLVVKKPKKPKKPKVGAPVSDKPLGRWVEDGKP
KVKSVRKSPGFGKARKKP
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgccgacctcggcctcatcgatccgctgctgcaggcgctcgccgccctggag
cacagctcccccactcccatccagcgccaggccatcccggcggtgctggccggacgcgat
ctgctggccgcggcccagaccggtaccggcaagaccggcgccttcgggctgccgctcttg
cagcgactggtgcaggaaggtccggcggtgacgcccaaccatatccgtgcgctgatcctc
acacctacccgcgaactggccgagcaggtccatgccagcctgcatgactatgcccggcac
ctgccgctgcgcaccgcggtggcctatggtggcgtgagcatcaatccgcagatgatgaaa
ctgcgcaagggtgtcgatgtactggtggcgaccccgggtcgcctgctcgacctgttcagc
cagaacgccgtgcgcttcgatcaggtgcagctgctggtgctggatgaagccgatcgcatg
ctcgacctcggcttttcccgccaactgggcgagctgttcgtcatgctgccgcgcaagcgc
cagaccctgctgttctcggcgaccttctccgacgccgtgcgccaattggccgctccggta
ctgcgcgatccccagaccatcgacgtcagcccgcgcaacacggctgccgtgaccgtcaag
cagtgggtcgtgccggtggacaagaagcgcaagaccgaactcttcctgcacctctatcgc
agcggtcctcgccagcaggtgctggtgttcgccaagacgcgcaagggcgtggaacaactg
gtggaggtgctgcaggccgaaggcctggcggcggagtccatccatggtgacaagccccag
ccggcgcggctgcgcgccctcgcccgcttcaaggctggcgaggcggatatcctggtcgcc
accgacgtggccgcccgcggcctggacatccaggacctacccctggtggtcaacctggac
ctgcccatcgtcgccgaggattacgtgcatcgcattggccggaccggccgcgcgggcaac
cagggccaggcggtttcgctggtctgcgccgatgaagtggaccaactggcggccatcgag
accctcatcggccaggtcctgccgcgccgcgacgaaccggacttcatccccgatcaccgt
gttccggaaacccggcccaacgggctggtggtgaaaaagcccaagaagccgaaaaagccc
aaggtcggcgcaccggtgtccgacaagccgctggggcgctgggtggaagatggcaagccc
aaggtcaagtcggtgcgtaagtcacccggcttcggcaaggcgcgcaagaagccctga
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