Pseudomonas oryzihabitans USDA-ARS-USMARC-56511: APT59_16625
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Entry
APT59_16625 CDS
T04267
Name
(GenBank) lytic transglycosylase
KO
K08309
peptidoglycan lytic transglycosylase [EC:
4.2.2.29
]
Organism
por
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511
Brite
KEGG Orthology (KO) [BR:
por00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
por01011
]
APT59_16625
Enzymes [BR:
por01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
APT59_16625
Peptidoglycan biosynthesis and degradation proteins [BR:
por01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
APT59_16625
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Gene cluster
GFIT
Motif
Pfam:
SLT
SLT_L
Cucumo_coat
TPR_19
Motif
Other DBs
NCBI-ProteinID:
ALZ85749
UniProt:
A0A0U4WCL5
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Position
3645544..3647472
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AA seq
642 aa
AA seq
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MRGRLFVILPLLLAPLIGSTTSQAAPLEQQRQLYDQAKAALDRGDASVYLANRGDLRTYP
LEPYLAYDELIKRVPGASDAEIETFLAEHGDLPQSNWLRLRWLRSLADRGDWNRFEKYYS
PDYNFTELDCLHGQYLIAQGNASEGFKLAEKYWLVGKAQPTSCDGLFQAWAARGQLTEER
VWERAKLAADKGEYGLVRTLSAQLPTLSGQAQRLIDVAQKPQQIANVQAFAPASESLADV
VGLGLRKLARQDPEQAMGLLEVYSQRMPFTRDEKVAIARQIGLTLAKNFDPRALPLMERY
DPELRDDDVSEWRARLLLRLGRWSDAHALIERFPPSLAKANRWEYWRARTLELMQPQSPQ
VLREYAEVSRERDYYGFLAADRSKAPYQLNNKPLMLSDALKRKVRNTPGVQRALEFIARG
EPINARREWFYVSRHFNRDELVAQARMAYDMQWYFPAIRTISLAKYWDDLDIRFPIAYRE
SFVREAQTRGLHSSWVFAITRQESGFMADARSGVGAIGLMQLMPATASHTASKFAIPLAS
PQQALTPEKNIQLGTAYLSMVHAQFNGNRVLASAAYNAGPGRVKRWLSGARHLAFDVWVE
TIPFDETRQYVQNVLAYAVIYGQKLNSPQPLVDWNERFFDET
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggtcgcctgttcgtcatcctgcccctgctcctcgctcccctgatcggctccacc
acctcgcaagccgctcccctggagcagcagcggcaactctacgaccaggccaaggcggcg
ctggaccggggcgacgccagtgtctacctggccaatcgcggcgacttgcgcacctatccg
ctggagccttacctggcttacgacgagctgatcaagcgcgttcctggcgccagcgacgcc
gagatcgagacctttctcgccgagcacggcgatctgccgcaatccaactggctgcggctg
cgctggctgcgcagcctggccgatcgcggcgactggaatcgcttcgagaaatactattcg
cccgactacaacttcaccgagctggactgcctgcacggccagtacctgatcgcccagggc
aatgccagcgagggcttcaagctggcggaaaagtactggctggtgggcaaggcccaaccg
accagctgcgatggcctgttccaggcctgggcggcgcgcggccagctcaccgaggagcgg
gtctgggaacgcgccaagctggccgccgacaaaggcgagtacggcctggtgcgcaccctc
tccgcccagttaccgaccctgtccggccaggcccagcggctgatcgacgtggcccagaag
ccccagcagatcgccaatgtccaggccttcgccccagccagcgaaagcctcgccgacgtg
gtcggcctgggactgcgcaaactggcccgccaggacccggaacaggccatgggcctgctc
gaggtctacagccagcgcatgcccttcacccgcgacgagaaggtggccatcgcccgccag
atcggcctgaccctggccaagaacttcgatccgcgcgccctgccgctgatggagcgctac
gatcccgagctgcgtgacgacgacgtcagcgaatggcgcgcccgactgctcctgcgcctg
ggccgctggagcgatgcccatgccctgatcgagcgcttcccaccgagcctggccaaggcc
aatcgttgggaatactggcgcgcccgcaccctggagctgatgcagccgcagagtccgcag
gtgctgcgcgaatacgccgaggtcagccgtgagcgtgactactacggcttcctcgccgcc
gaccgcagcaaggcgccctatcagctcaacaacaagccgctgatgctcagcgacgcgctc
aagcgcaaggtacgcaacacgcctggcgtgcagcgtgccctggagttcatcgcccgcggc
gagccgatcaatgcccgccgcgagtggttctatgtcagccggcacttcaaccgtgacgaa
ctggtcgcccaggcccgcatggcctacgacatgcagtggtacttcccggcaatccgcacc
atcagcctcgccaagtactgggacgacctggacatccgcttccctatcgcctatcgggaa
agcttcgtgcgcgaggcccagacccgcggcctgcacagcagctgggtgttcgccatcacc
cgccaggagagcggcttcatggccgatgcgcgctccggcgtgggcgccataggattgatg
cagttgatgccggccaccgccagccataccgccagcaagttcgccattcccctggcctcg
ccgcagcaggcgctgaccccggaaaagaacatccagctgggcaccgcctatctgtccatg
gtccatgcccagttcaacggcaaccgcgtattggcctcggccgcctacaacgccgggccg
ggccgggtgaagcgctggctgagcggcgcccgccacctggccttcgatgtctgggtggag
accattcccttcgacgagacgcggcaatatgtgcagaacgtgctggcctatgcggtgatc
tacgggcagaagctcaattcgccgcaacccctggtggactggaacgagcgcttcttcgac
gagacctga
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