Pseudomonas oryzihabitans USDA-ARS-USMARC-56511: APT59_19535
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Entry
APT59_19535 CDS
T04267
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
por
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511
Pathway
por03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
por00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT59_19535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
por03019
]
APT59_19535
03016 Transfer RNA biogenesis [BR:
por03016
]
APT59_19535
Enzymes [BR:
por01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
APT59_19535
Messenger RNA biogenesis [BR:
por03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APT59_19535
Transfer RNA biogenesis [BR:
por03016
]
Prokaryotic type
tRNA degradation factors
APT59_19535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ALZ86292
UniProt:
A0A0U4X4C5
LinkDB
All DBs
Position
complement(4293397..4296207)
Genome browser
AA seq
936 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILAHLADRGAPATRPQLAEEFGLVTEDQLEALR
RRMRAMERDGQVIYTRRGAYAPIDKLDLVRGRIAGHRDGFGFLIPDDGSDDLFLSPSQMR
LVFDGDIALARVAGHDRRGRREGGLVEVVTRAHESLVGRFFQESGLAYVVPDNPKIGQQV
LVPEGKHGGAAHGQFVQVRIDEWPTTFRQAQGEVIEILGDYMAPGMEIEVALRSYDIPNE
WPKAVEKEAAKLKPEVEEKDKQKRIDLRQLPFVTIDGEDARDFDDAVYAEAKKSGGWRLY
VAIADVSHYVKVGSALDAEAEKRGNSVYFPERVIPMLPEALSNGLCSLNPQVDRLAMVCE
MTIAASGRMTGYQFYEAVIHSHARLTYNKVSAVLEQPKSTEGKQLRKQLGEVVPHLEQLY
SLYKVLLAARHVRGAIDFDTQDTRIVFGADRKISEIRPTQRNDAHKLIEECMLCANVATA
KFLEKHKVPALYRVHDAPPLEKQTNLRQFLGEMGLSLTKGKANPVPSDYQALLQQIRERP
DFRLIQTVMLRSLSQAVYSPDNNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSVIRSKL
ETKHVKRAGATSMAKARIYPYDELRLDQLGEQCSMTERRADEATRDVSNWLKCEFMKDRV
GETYAGVITAVTGFGLFVELSEVFVEGLVHVTALPDDYYHFDSVHHRLSGERSGRSYRLG
DPLEVVVARVDLDERKIDFVLPASAGAPRVREEREPRRKRDSRGRRREAPAEAQAVAPTP
EAPATSVSPELLEQADKLLGNTDVKRSRAVKQALLAEAKVEGGKPKAKGKSSGQSKAGTQ
GKTTAQGKADKGKADKGKASATAKARTAPAGRRAPDAAAEGAAAVEAKVKKSKAAAAKKK
SAAKPKAEGQAQAAAKSRTKAKKPHRKGQSRPKDDA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgcccgggaagcggaaaagtacgataac
cccattccgagtcgcgaactcattctggctcatctcgccgatcgcggcgctccggccaca
cggcctcaactggccgaggagttcggcctcgtcaccgaggaccagctcgaagccctgcgg
cgccgcatgcgtgccatggagcgcgatggccaggtgatctatacccgccgtggcgcctat
gcgcccatcgacaagctggacctggtgcgcggacgcatcgccggccatcgcgatggcttc
ggcttcctgatccccgacgacggcagcgacgacctcttcctcagcccgtcgcagatgcgc
ctggtgttcgatggcgacatcgccctggcgcgggttgccggccatgatcgtcgcggtcgc
cgcgaaggtggcctggtcgaggtggtcacccgggcgcacgaatccctggtcggtcgcttc
ttccaggagagcggcctggcctacgtggtgccggacaatcccaagatcggtcagcaggta
ctggtgcccgaaggcaagcacggcggcgccgctcatggtcagttcgtgcaggtgcgtatc
gacgaatggcccaccaccttccgtcaggcccagggcgaggtgatcgagatcctcggcgac
tacatggcgcccggcatggagatcgaggtggcgctgcgcagctacgacatccccaacgaa
tggcccaaggccgtcgaaaaggaagccgccaagctcaagcccgaggtcgaggagaaggac
aagcagaagcgcatcgacctacgtcagctgcccttcgtgaccatcgatggcgaagacgct
cgcgacttcgatgatgccgtctacgccgaggccaagaagtcgggtggctggcggctgtac
gtcgccatcgccgacgtctcccactacgtcaaggtcggttcggcgctggacgccgaggcg
gagaagcgcggcaactcggtgtatttccccgagcgggttatccccatgctgccggaagcc
ctgtccaacggcctttgctcgctcaatccccaggtggatcgcctggccatggtctgcgag
atgaccatcgccgcctccgggcgcatgaccggctaccagttctacgaagcggtcatccac
tcccacgcgcgcctgacctacaacaaggtttcggcggtgctggagcagcccaagtcgacc
gaaggcaagcagttgcgcaagcagctcggcgaggtggtgccacacttggagcagctctac
agcctgtacaaggtgctgctggctgcccgtcacgtacgcggtgccatcgatttcgacacc
caggacacccgcatcgtctttggcgccgaccgcaagatttccgagatccgcccgacccag
cgcaacgatgcccacaagctgatcgaggaatgcatgctgtgcgccaacgtggccactgcg
aaattcctcgagaagcacaaggtgccggccctgtaccgggtgcatgacgcgccgcccctg
gaaaagcagaccaatctgcgccagttcctcggcgagatggggctgtccctgaccaagggc
aaggccaatccggtgccgtcggactaccaggcgctgctccagcagatccgcgagcggccg
gacttccggctgatccagacggtgatgctcagatcgctgagccaggcggtctacagcccg
gacaacaacggtcacttcggtctcaactacgaggcctatacccatttcacctcgccgatc
cggcgctatccggatctgctggtgcatcgggcgatccgcagcgtgatccgctccaagctg
gagaccaagcacgtcaagcgtgcaggcgcgacgagcatggccaaggcgcgcatctatccc
tacgacgaattgcgcctggatcagctcggtgagcagtgctccatgaccgagcgccgcgcc
gacgaagccacgcgggacgtctccaactggctcaagtgcgagttcatgaaggatcgcgtt
ggcgaaacctatgccggcgtcatcaccgcggtgaccggtttcggcctgttcgtcgagctg
tccgaggtcttcgtcgagggcctggtgcacgtcaccgcgctgcccgacgattactaccac
ttcgacagcgttcaccatcgcctctccggcgagcgcagcggccgcagctatcgcctgggt
gatcccctcgaggtggtggtggctcgcgtcgacctggacgaacgcaagatcgacttcgtg
ctgccggccagtgccggggcgccgcgtgtgcgggaagagcgcgagccgcgtcgcaagcgt
gacagtcgcggtcgtcgccgcgaggcgccagcggaagcgcaggccgtcgccccgacgcca
gaagcaccggctacctcggtatcgccggaactgctggagcaggccgacaagctgctgggc
aataccgacgtcaagcgcagtcgcgcggtgaagcaggcgctgctggcggaagccaaggtc
gagggcggcaagcccaaggccaagggcaagtccagcggtcagagcaaggccggtacccag
ggcaagaccacggcccagggcaaggctgacaagggtaaggctgacaagggcaaggccagt
gccacggccaaggcgcgtacggctccggcagggcgccgggcaccggatgccgccgccgaa
ggcgctgccgcggtggaggccaaggtcaagaagtccaaggccgctgccgccaagaagaaa
tctgcagccaagcccaaggccgaaggccaggctcaggccgcggccaagagcaggaccaag
gccaagaagcctcatcgcaagggtcagtcgcgcccaaaggatgacgcatga
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