Pseudomonas oryzihabitans USDA-ARS-USMARC-56511: APT59_21960
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Entry
APT59_21960 CDS
T04267
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
por
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511
Pathway
por03420
Nucleotide excision repair
por03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
por00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
APT59_21960 (uvrD)
03430 Mismatch repair
APT59_21960 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
por03400
]
APT59_21960 (uvrD)
Enzymes [BR:
por01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APT59_21960 (uvrD)
DNA repair and recombination proteins [BR:
por03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
APT59_21960 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
APT59_21960 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_22
AAA_11
DUF4391
Motif
Other DBs
NCBI-ProteinID:
ALZ86749
LinkDB
All DBs
Position
4828427..4830595
Genome browser
AA seq
722 aa
AA seq
DB search
MNDDISLLLNSLNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVERASPHSIL
SVTFTNKAAAEMRHRIEQLLGMSPQGMWVGTFHGLAHRLLRAHWQEAGLSQNFQILDSDD
QQRIVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQAAGDLFLSTMRSIYEAYE
AACARAGVIDFSELLLRALDLWRNNPSLLEHYQRRFQHLLVDEFQDTNAVQYAWLKHLAQ
NGASLMVVGDDDQSIYGWRGAKIENIQQFNEDFSAEIIRLEQNYRSTDTILKAANGLIAH
NFGRLGKELWTDTGEGDAITLYAGFNEHDEARYIVETIESEFKKGTTRREMAILYRSNAQ
SRVLEEALLREKIPYRIYGGLKFFERAEIKNAMAYLRLIQHRHDDAALERVINVPPRGIG
EKTVEALRTAARAQNTSLWQALHDLVGARAVSGRAASALNAFVELVDTLALKAEDLSLHS
LVQQIIEQTGLVTFHKEEKGEKGQARVENLEELVSAARSFDFSGDEEMTPLAAFLDHAAL
ESGDTQADSHEDSVQLMTLHSAKGLEFPLVFLAGMEEGLFPHKMSLEEPGRLEEERRLAY
VGITRAMRRLVMSYAETRRLYGSETYNKVSRFVREVPDGLIQEVRLSNAVKQPFAGSRAS
PFAQAPVPETTFSLGQPVRHALFGEGVILNYEGSGAHARVQVNFKSEGSKWLMVSYAKLE
PL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgacatctctctgctgctcaattccctcaacgatgcccagcgccaggccgtg
gccgcgcccctgggtcgccaactggttctggctggtgccggctcgggcaagacccgggtg
ctggtacatcgcatcgcctggctgatccaggtcgagcgcgcctcgccgcactcgatcctc
tcggtgacctttaccaacaaggccgccgccgagatgcgccaccgcatcgagcagttgctg
ggtatgagtccgcagggcatgtgggtaggcaccttccatggcctggctcaccgcctgctg
cgcgctcattggcaggaagcgggactgtcacagaatttccagatcctcgacagcgacgac
cagcagcgcatcgtcaagcgggtgatccgcgagctgggtctcgatgagcagcgctggcct
gcgcgccaggcacagtggttcatcaatggacagaaggacgagggcctgaggccgcagcac
atccaggccgctggcgatctcttcctcagcaccatgcgcagcatctacgaagcctacgag
gcggcctgcgcccgtgccggggtgatcgatttctccgagttgctgctgcgcgccctggat
ctctggcgcaacaaccccagcctgctcgaacactaccagcggcgcttccagcacctgctg
gtggacgaattccaggacaccaacgccgtccagtacgcctggctcaagcaccttgcccag
aatggcgccagcctcatggtggtgggcgacgatgatcagtccatctatggctggcgcggt
gccaagatcgagaacatccagcagttcaacgaggacttctcggcggagatcatccggctg
gagcagaactatcgctccaccgacaccatcctcaaggccgccaacggcctgatcgcccac
aacttcggtcgtctcggcaaggagctgtggacagataccggcgaaggcgatgccatcacc
ctctatgccggcttcaacgagcacgacgaggcgcgctacatcgtcgagaccatcgagagc
gagttcaagaagggcacgacccgccgcgagatggccatcctctatcgctccaacgcccag
tcacgggtgctggaagaggcgctgttgcgcgaaaagatcccctatcgcatctatggcggc
ctgaaattcttcgagcgcgccgagatcaagaatgccatggcctatctgcggctgatccag
caccgccacgacgatgccgccctggagcgggtgatcaacgtgccgccgcggggcatcggc
gaaaagaccgtagaggccttgcgcaccgccgcacgcgcccagaacacctcgctgtggcag
gcgctacacgacctggtcggtgcccgcgccgtatccggtcgcgccgcctcggcgctcaac
gccttcgtcgaactggtcgacaccctggcgctgaaggccgaagacctgtccctgcacagc
ttggtgcagcagatcatcgagcagaccggcctggtcaccttccacaaggaagagaagggc
gaaaagggccaggcgcgggtggaaaacctggaggaactggtcagcgccgcgcgctccttc
gatttcagcggcgacgaggagatgacgcccctggcggccttcctcgaccatgccgccctg
gaatccggcgatacccaggccgacagccacgaagacagcgtccagctcatgaccctgcac
agcgccaagggcctggaattccccctggtgttcctggccggcatggaagaaggcctgttc
ccgcacaagatgagcctggaagagcccggccgtctggaagaggaacgccgcctggcctat
gtcggcatcacccgcgccatgcgccgactggtgatgagctatgcggagacccgccgcctc
tatggcagcgagacctacaacaaggtctcgcgcttcgtccgcgaggtgccggatggtctg
atccaggaggtgcggttgtccaacgcggtcaagcagcccttcgctggcagtcgggccagt
cccttcgcccaggcaccggtaccggaaaccaccttcagcctcggtcagccggtgcgccat
gccctgttcggcgaaggcgtcatcctcaactacgagggctccggcgcccatgcgcgggtg
caggtgaacttcaagtccgaaggcagcaagtggctgatggtgagctacgccaagctcgaa
ccgctctag
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integrated database retrieval system
