Porphyrobacter sp. CACIAM 03H1: CBR61_00435
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Entry
CBR61_00435 CDS
T09981
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
porc
Porphyrobacter sp. CACIAM 03H1
Pathway
porc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
porc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CBR61_00435 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
porc03021
]
CBR61_00435 (rpoC)
03400 DNA repair and recombination proteins [BR:
porc03400
]
CBR61_00435 (rpoC)
Enzymes [BR:
porc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CBR61_00435 (rpoC)
Transcription machinery [BR:
porc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CBR61_00435 (rpoC)
DNA repair and recombination proteins [BR:
porc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CBR61_00435 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
YqfD
YnfE
Motif
Other DBs
NCBI-ProteinID:
ASJ89549
UniProt:
A0A2Z2P4V7
LinkDB
All DBs
Position
complement(92331..96641)
Genome browser
AA seq
1436 aa
AA seq
DB search
MNDLTKFTNQLAKPETFDQIQIGIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKYQLLTEDELLEAQDEYGEDAFTAD
IGAEAVRTMLMQLDLEAERDALMDELATTKSALKPKKIIKRLKVVESFIESGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMERQEKHPEFIEEADGTKIEKLPRF
ADMAEVHQALETKAVTLHTRIIARVPQADENGNVEMKRFVTTPGRMLIGECLPKNHKVPF
DIINRLLTKREIGDVIDQVYRHTGQKDTVLFADAIMALGFRHAFKAGISFGKDDMIIPDA
KEKLVEETKELVAGYEQQYQDGLITQQEKYNKVIDAWSKCGDMVADAMMAEIKAQPIDPE
TGKEAQINSIYMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEY
FNSTHGARKGLADTALKTANSGYLTRRLVDVSQDCVIVEEDCGTQNALEMRAIVQGGSVI
ASLGERILGRTVAEDIVNAATGEVIVPAGTLLDESMVKAIEAAEVQSAKIRSPLICEAEQ
GVCATCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSHLEAI
SEGRVEYRDMPTITDKQGRILSLARNGELAVIDAEGREREMHKVPYGTVLKFKDGDHVKV
GDRLAEWDPFTLPIITEQSGVVKYQDLAEGVTLEEQVDDATGIAQRVVTENRATGRKKKE
DLRPRLTLLAEGTGETEAARYMLAPGTTLSVADGDTVQAGDILARASREAAKTRDITGGL
PRVAELFEARMPKDVSIIAKISGRIEFVREYKAKRKIAIIPEEGEPVEYLIPKTKVIDVQ
EGDYVKKGDTLISGSPNPHDILEVLGVEALAEYLVNEIQEVYRLQGVKINDKHIEVIVRQ
MLQKVEITDGGDTTLLPGEQVDLAEMLEINAKLMQSGKGKAPAQGTPVLLGITKASLQTR
SFISAASFQETTRVLTQAAVEGKKDTLIGLKENVIVGRLIPAGTGAGMNRLRVTANSRDA
ALKAAWKRQQDALAASGQREVEPAADAIGSEEKMKAAMAAMAASAPAADVEDDGEE
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctgaccaaattcaccaaccagctggcgaagcccgaaaccttcgaccagatc
cagatcggcatcgcctcgccggagcgcatccgctcgtggtcctatggcgagatcaagaag
cccgaaacgatcaactaccgcaccttcaagccggagcgtgacggcctgttctgcgcgcgc
atcttcggccccgtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtcaccgtgaccaaggtccgccgcgag
cgcatgggccacatcgagctggccgcgcccgtcgcgcacatctggttcctgaagtcgctg
ccctcgcgcatcggcctgctgctcgacatgcagctgaagcagctcgagcgcgtgctctac
ttcgaaagctacatcgtcaccgagccgggcctcaccccgctcgagaagtaccagctgctc
accgaggatgaactcctcgaggcgcaggacgagtatggcgaagacgccttcaccgccgac
atcggcgccgaagccgtgcgcaccatgctgatgcagctcgacctcgaggccgagcgcgac
gcgctgatggacgagctcgccaccaccaagtcggcgctcaagcccaagaagatcatcaag
cgcctcaaggtcgtcgaaagcttcatcgaatccggcaaccgtccggagtggatgatcctc
gaagtgatcccggtcattccgcccgaactgcgcccgctggtgccgctcgacggtggccgc
ttcgcgacctcggacctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgtctg
aagcgcctgatcgaactgcgcgcgccggacatcatcgtgcgcaacgaaaagcgcatgctg
caggaagcggtcgacgcgctgttcgacaacggccgccgtggccgcgtcatcaccggcgcc
aacaagcgtccgctgaagtcgctctccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtgaccggtccg
gaactcaagctgcaccagtgcggtctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgcctcgatgccaagggtctttccatgaccctcaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctcgacgaggtgatccgcgagcac
ccggttctcctgaaccgcgcgccgacgctgcaccgcctcggcatccaggcgttcgagccc
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgctcggccttcaacgcc
gacttcgacggtgaccagatggcggtccacgtgccgctgtcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccctcgcaggacatggttctggggatctactacctctcgatggagcggcaggag
aagcaccccgagttcatcgaggaagccgacggcaccaagatcgagaagctcccgcgcttt
gccgacatggccgaagtgcaccaggcgctcgagaccaaggctgtcacgctccacacccgc
atcatcgcccgcgttccgcaggccgacgagaacggcaacgtggaaatgaagcgcttcgtc
accacgccgggccgcatgctgatcggcgagtgtctgccgaagaaccacaaggtgcccttc
gacatcatcaaccgcctgctcaccaagcgcgagatcggcgacgtgatcgaccaggtgtat
cgtcacaccggccagaaggacacggtgctgttcgccgacgccatcatggcgctgggcttc
cgccacgcgttcaaggccgggatcagcttcggcaaggatgacatgatcatccccgacgcc
aaggagaagctggtcgaggagaccaaggaactggttgccggttacgagcagcagtaccag
gacggtctcatcacccagcaggaaaagtacaacaaggtgatcgacgcctggtcgaagtgc
ggtgacatggtcgccgacgcgatgatggccgagatcaaggcgcagccgatcgatcccgag
acgggcaaggaagcccagatcaactcgatctacatgatgagccactcgggtgcgcgtggt
agcccggcgcagatgaagcagctcgcggggatgcgcggtctgatggccaagccttcgggc
gagatcatcgagaccccgatcatctcgaacttcaaggaaggtctgaccgttcttgaatac
ttcaactcgacccacggcgcccgcaagggcctcgcggacaccgcgctgaagaccgcgaac
tcgggttacctgacccgccgtctcgtcgacgtgtcgcaggattgcgtcatcgtcgaggaa
gattgcggcacccagaacgcgctcgaaatgcgcgccatcgtgcagggcggttcggtgatc
gcctcgctcggcgagcgcatcctcggccgcacggtcgcggaagacatcgtcaacgcggcg
accggcgaagtcatcgttccggcgggcaccctgctcgacgaatcgatggtcaaggcgatc
gaggcggcggaagtccagtcggccaagatccgctcgccgctgatctgcgaagccgaacag
ggcgtttgcgcgacctgctacggccgtgacctcgcccgcgggaccccggtgaacatcggc
gaagcggtgggcgtcatcgcggcgcagtcgatcggcgagcccggcacccagctgacgatg
cggaccttccacatcggcggcgcggcgcagctcaacgagacctcgcacctcgaggcgatc
tcggaaggccgtgtcgaataccgcgacatgccgaccatcaccgacaagcagggccgcatc
ctcagcctcgcccgcaacggcgagctggccgtgatcgacgccgaagggcgcgagcgcgag
atgcacaaggtgccctacgggaccgtcctcaagttcaaggacggcgaccatgtgaaggtc
ggcgatcgtctcgccgagtgggacccgttcaccctgccgatcatcaccgagcaatcgggc
gtggtgaagtatcaggatctggccgagggcgtcacgctcgaggagcaggtcgatgatgcc
accgggatcgcgcagcgcgtggtgaccgagaaccgcgccaccggccgcaagaagaaggag
gacctgcgtccgcgcctgacccttctggccgaaggcaccggcgagaccgaggcggcacgc
tacatgctcgccccgggcacgaccctttcggtggcggatggcgacacggtgcaggcgggc
gacattctcgcccgtgcgagccgcgaagccgccaagacccgcgacatcaccggcggtctg
ccgcgcgtggccgagctgttcgaggcgcgcatgcccaaggacgtctcgatcatcgccaag
atctccggccggatcgaattcgtccgcgagtacaaggcgaagcgcaagatcgcgatcatc
cccgaggagggcgaacccgtcgagtacctgatccccaagaccaaggtgatcgacgtgcag
gaaggcgactacgtgaagaagggtgacaccctgatttccggctcgccgaacccgcacgac
atcctcgaggtgctgggcgtcgaggcgttagccgaatatctcgtcaacgagatccaggaa
gtctaccgcttgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccag
atgctgcagaaggtcgagatcaccgatggcggggacaccaccctgctgcccggtgagcag
gtcgatctggcagagatgctcgagatcaacgccaagctgatgcagagcggcaagggcaag
gcgcccgcgcagggcaccccggtgctgctcggcatcaccaaggcgagcctccagacacgc
tcgttcatctcggcggcctcgttccaggaaaccacccgcgtgctgacgcaggcggcggtc
gaagggaagaaggacaccctgatcgggctcaaggagaacgtgatcgtcgggcgtctcatc
cccgccgggacgggtgcgggcatgaaccgcctgcgcgtcaccgccaacagccgcgatgcg
gcgctgaaggcggcgtggaagcgccagcaggatgcgctcgccgcttccggccagcgcgag
gtcgaaccggccgccgacgcgatcggttcggaagagaagatgaaggccgcgatggccgcg
atggcggcctccgcccccgcagccgacgtcgaggatgacggcgaagagtaa
DBGET
integrated database retrieval system
