Porphyrobacter sp. CACIAM 03H1: CBR61_02040
Help
Entry
CBR61_02040 CDS
T09981
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
porc
Porphyrobacter sp. CACIAM 03H1
Pathway
porc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBR61_02040 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
porc03021
]
CBR61_02040 (rho)
03019 Messenger RNA biogenesis [BR:
porc03019
]
CBR61_02040 (rho)
Transcription machinery [BR:
porc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CBR61_02040 (rho)
Messenger RNA biogenesis [BR:
porc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CBR61_02040 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
Spore_III_AA
ATPase_2
AAA_22
NACHT
AAA_25
S1CSD-TOTE-2
AAA
AAA_14
GpA_ATPase
ResIII
Motif
Other DBs
NCBI-ProteinID:
ASJ89835
LinkDB
All DBs
Position
complement(417276..418541)
Genome browser
AA seq
421 aa
AA seq
DB search
MHLKDLKRKTPAELVAMAEELGVEGASTMRRQDLLFSILRELAEDEEYEEKIMGIGTIEV
LQDGFGFLRSPEANYLAGPDDIYVSPNQVRRWGLRTGDTVEGEIRAPRDGERYFALTSLA
KVNFDDPDAVRLRTNFDNLTPLYPDQKLNLDTLDPTVKDKSARVIDIIAPQGKGQRALIV
APPRTGKTVLLQNIAKAITDNHPEVFLIVLLVDERPEEVTDMQRSVKGEVISSTFDEPAN
RHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVSDKRIFPA
LDVGKSGTRKEELLVQKDNLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFATMN
Q
NT seq
1266 nt
NT seq
+upstream
nt +downstream
nt
atgcatttgaaggacctcaagcgaaagaccccggccgaactggtcgcgatggcggaagaa
ctcggagtcgagggcgcctcgaccatgcgccggcaggatctgctcttctcgatcctgcgc
gagctcgccgaagacgaggaatacgaagagaagatcatgggcatcggcaccatcgaggtg
ctgcaggacggcttcggcttcctgcgctcgcccgaggcgaactacctcgccgggccggac
gacatctacgtctcgcccaaccaggtccgccgctggggcctgcgcaccggagacacggtg
gaaggcgaaatccgcgcgccgcgcgatggcgagcgttacttcgcgctcaccagcctcgcc
aaggtcaacttcgacgatcccgatgcggtccgcctgcgcacgaatttcgacaacctgacc
ccgctctatccggaccagaagctcaatctcgacacgctcgacccgaccgtgaaggacaag
agcgcgcgggtgatcgacatcatcgcgccgcagggcaagggccagcgcgcgctgatcgtc
gcgccgccccgcacgggtaagacggtgctcctccagaacatcgccaaggcgatcaccgac
aatcaccccgaggtgttcctgatcgtcctgctggtcgatgaacgtcccgaggaagtcacc
gacatgcagcgcagcgtgaagggcgaggtcatctcctcgaccttcgacgagcccgccaac
cgccacgtgcaggtcgccgagatggtgatcgagaaggccaagcgcctcgtcgagcacaag
cacgacgtcgtcatcctgctcgactcgatcacccgcctcggccgcgcctacaacacggtg
gtgccgtcctcgggcaaggtgctgaccggcggtgtcgacgccaacgccctccagcggccc
aagcggttcttcggcgcggcgcgcaacatcgaggaaggtggcagcctctcgatcatcgcc
accgcgctgatcgacaccggcagccgcatggacgaagtcatcttcgaagagttcaagggc
accggcaactcggaaatcgtgctcgaccgcaaggtttccgacaagcgcatcttcccggcg
ctcgatgtcggcaagtccggcacccgtaaggaggagctgctggtccagaaggacaacctc
tccaagatgtgggtcctgcgccgcatcctgatgcagatgggcaccgtagatgcgatggaa
ttcctgctcgacaagatgaaggattccaagaccaacgaggacttcttcgctacgatgaat
caatag
DBGET
integrated database retrieval system
