Porphyrobacter sp. CACIAM 03H1: CBR61_08115
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Entry
CBR61_08115 CDS
T09981
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
porc
Porphyrobacter sp. CACIAM 03H1
Brite
KEGG Orthology (KO) [BR:
porc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porc03019
]
CBR61_08115 (hrpB)
Enzymes [BR:
porc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CBR61_08115 (hrpB)
Messenger RNA biogenesis [BR:
porc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CBR61_08115 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
Flavi_DEAD
AAA_30
Cas3-like_C_2
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASJ90887
UniProt:
A0A2Z2PCL7
LinkDB
All DBs
Position
1703730..1706165
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AA seq
811 aa
AA seq
DB search
MKPDLPIHAVLPQIRAALAGAGAAVLIAPPGAGKTTAVAPDLLGEAWCTGQIILTSPRRV
AARAAAERMAELLGEKPGETVGYMTRLDSKVSARTRILVVTEAILVNRLVEDPELPGVSA
VLFDEAHERALDSDLGLALALETRAVLREDLRVLLMSATIDGARFARLLGEGAAVIESEG
RSFPLAIKWLGGDASQAIEDRMAGAILTAWREEAGDILAFLPGVREIERVRERLEPRLAG
TPIHPLHGQIEPAAQRAAIRRDPEGRRRIVLATAIAETSLTLDGVSVVVDSGLARLAEFD
RAAGTTHLVTRRASQASAAQRAGRAARQGPGVAYRLWEEAGHAGRPEFAPAEIMQADLAP
LLLRLAKWGTADPASLPWLDPPPEASVAAARRALEALGALDAGGRITPFGQAVASLPMAP
DQAAAVLHGAAAGCGEDAARLVMLLQERGLGGRGEDLMQRLARWRGDRAPRSAAAAGIAR
GWAGQVAKLAGVIGTSPVQDAAEALALARPDFIARRRDPSGESWISAGGRGYILDSASPL
ARAEWIVIGDAQGQAKGARITAGAEIASDRIAALFVDELQERVTTRWNEQKNRVEARRER
RLGAIVLASVPEPAPDPALLVDILVEKALEKLGELMPEGFLARARFAGVEALSPEALSAR
AGEWLAPLLAGRRDLDLPPHRLAEAALGLLDWNARATLDKAAPTHFTSPADTRHPIDYAG
DDAPSVEVRVQGLFGLDTQPMIGSTPLLLKLTSPAGRPIQSTRDLPGFWRGSWRDVVKDM
KGRYPKHRWPDQPWLEKPSMKTKNAFNRSDS
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcccgaccttcccattcacgccgtactgccgcagatccgcgccgccctggccggg
gcaggcgctgccgtgctgatcgcgccgccgggggcggggaaaaccaccgctgtcgcgccc
gatctgctgggcgaggcgtggtgcaccggccagatcatcctcacctcgccgcgccgcgtc
gcagcccgcgccgccgccgagcgcatggcggaactgctcggcgagaagccgggcgagacg
gtcggctacatgacccggctcgacagcaaggtctccgcgcgcacccgcatactcgtcgtg
accgaggcgatcttggtgaaccggctggtggaggacccggaattgcccggtgtctcggcg
gtgctgttcgatgaggcgcacgagcgcgcgctcgacagtgatctgggccttgcgctggca
ttggagacccgcgccgtgctgcgcgaggacctgcgcgtgctcttgatgtcggccacgatc
gacggtgcgcgctttgcccggctgctcggcgagggcgcggccgtgatcgaaagcgagggg
cgcagctttcccttggcgataaagtggcttggaggcgatgcttcgcaggcgatcgaggat
cgtatggctggcgccatcctcaccgcgtggcgtgaagaggccggcgacattctcgccttc
ctgccgggcgtgcgcgagatcgagcgggtgcgcgagcggttggagccacgcctcgcaggc
accccgatccacccgctccatggccagatcgaacccgccgcccagcgcgccgcgatccgt
cgtgatcccgaagggcggcgacgcatcgtccttgcgaccgcgattgccgagacctcgctg
acgctcgacggggtgagcgtggtggtcgacagcgggctcgcgcgccttgccgaattcgac
cgcgcggcggggaccacccatctcgtcacccgccgcgcctcgcaagcctcggcggcgcag
cgggcggggcgcgcggcgcggcaggggccgggcgttgcctaccgcctgtgggaagaggcg
ggccacgccggccgacccgaattcgcgccggccgaaatcatgcaggccgaccttgcacca
ctgctgctgcggctggcgaaatggggcactgccgatccggccagcctgccgtggctcgac
ccgccccccgaggcttcggtcgccgccgcgcggcgggcgcttgaggcgctgggcgcgctc
gacgcaggcgggcggatcacgccgttcgggcaagccgtggcgagcctgccgatggccccc
gatcaggccgccgccgtgctccacggcgctgcggcgggttgcggcgaggatgccgcgcgg
ctggtgatgctgctccaggaacgcggcctcggtgggcgcggcgaggacctgatgcagcgc
ctcgcccgctggcgcggcgaccgcgcgccgcgcagcgcggcggcggcggggatcgcgagg
ggttgggcagggcaggtggccaagcttgcaggcgttatcggcacgagccccgtgcaggat
gctgccgaagccctcgcgctcgcccgtcccgatttcatcgcccgccgccgcgacccttcg
ggcgagagctggatcagcgccggggggaggggctatatcctcgactccgcctcaccgctg
gcgcgggccgaatggatcgtgatcggcgatgcgcagggtcaggccaagggtgcgcgcatc
acggcgggggcggagatcgcgtccgaccgcatcgcggccctgtttgtggacgaacttcag
gaacgcgtcacaacccgctggaacgagcagaagaaccgggtcgaagcccggcgcgagcgg
cggctcggggcgatcgtgctggcaagcgttcctgagcctgcgcccgatccggcgctgctt
gtggatatcctagtggaaaaagcgctggagaaactgggggaactcatgcccgaaggcttc
ctcgcccgcgcccgcttcgccggggttgaggcgctttcgcccgaggccttgtctgcgcgt
gccggcgagtggctcgccccgctgctggcgggccgtcgcgatctcgacctgccgccgcat
cgcttagccgaggccgctctggggctgctcgactggaatgcccgcgcaacgctcgacaag
gctgcgcccacccatttcacctcgcccgccgacacgcgccacccgatcgattacgccggc
gacgacgcgccgagcgtcgaggtcagggtccagggcctcttcgggctcgacacgcagccg
atgatcggcagcaccccgttgctgctcaagctcaccagcccggcgggccgcccgatccag
tcgacccgcgacttgcccggcttctggcgcggcagctggcgcgacgtggtcaaggacatg
aagggccgctatcccaagcatcgctggcccgatcagccgtggctggaaaagccgagcatg
aagaccaaaaacgccttcaaccgcagcgattcgtga
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