Porphyrobacter sp. CACIAM 03H1: CBR61_09060
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Entry
CBR61_09060 CDS
T09981
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
porc
Porphyrobacter sp. CACIAM 03H1
Pathway
porc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBR61_09060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porc03019
]
CBR61_09060
Enzymes [BR:
porc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBR61_09060
Messenger RNA biogenesis [BR:
porc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBR61_09060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ASJ91052
UniProt:
A0A2Z2P3L8
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All DBs
Position
1894891..1896441
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AA seq
516 aa
AA seq
DB search
MTTFAELGLSQPVLQALDMKGYTTPTPIQEQAIPPVLKGRDLLGIAQTGTGKTAAFMLPS
IDRLRENDKQIPFKSCRMLVLAPTRELAVQIGQSAKDYGALAGLKVQVIVGGTSVGKDRN
KLHRGTDILVATPGRLLDLVDQKAFNLNGIEVLVLDEADQMLDLGFIHALRKIRELAPKD
RQTLFFSATMPKAIKELVGGYCNNPVQVSVTPESTTAERIDQYLFMVQQDEKTALLEMIL
KGRHTVPGEFERILIFTRTKHGADRVVKKLAHAGIESNAIHGNKSQPQRQRALDEFRKAR
VPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGRDGVAIAFCAEDERA
YLKDIRKTTGAELERLPLPDNFRAVVEGEGPEKPAPRQPMKRVQPRPLGQRKPQGERREG
ENRGERRPQQGKPQGRPQHDRSGGGGERRPQQGEQRPQGDRRQPSAKAGQGGRPGGGGRP
QGQGHGGGANGGGGNRNRGRRGGGGGGGGRPRAAQG
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaccactttcgctgaactcgggttgtcgcagcccgtgctccaggccctcgacatgaag
ggctacaccactcccacgccgatccaggaacaggcgatcccgcccgtcctcaagggccgc
gacctgctcggcatcgcgcagaccggcaccggcaagaccgccgcgttcatgctcccgagc
atcgatcggctgcgcgagaacgacaagcagatccccttcaagtcctgccggatgctggtg
ctcgcaccgacccgcgaactcgcggtgcagatcggccagagcgccaaggattacggcgcg
ctcgcgggcctcaaggtgcaggtgatcgtcggcggcacctccgtcggcaaggaccgcaac
aagctccaccgcggcaccgacatcctggtggcgaccccgggccgcctgctcgacctcgtc
gaccagaaggccttcaacctcaacggcatcgaggtgctggtgctcgacgaggccgaccag
atgctcgacctcggcttcatccacgccctgcgcaagatccgcgagcttgctcccaaggat
cgccagacgctgttcttcagcgcgaccatgcccaaggcgatcaaggagctggtgggcgga
tactgcaacaaccccgtgcaggtctcggtgacgcccgaaagcaccaccgccgagcggatc
gaccagtatctcttcatggtccagcaggacgagaagaccgcgctgctcgagatgatcctc
aagggccgccacacggtgcccggcgagttcgagcgcatcctgatcttcacccgcaccaag
cacggtgccgaccgggtggtgaagaagctcgcccatgcaggcatcgaaagcaacgccatc
cacggcaacaagtcgcagccgcagcgacagcgcgcgctcgacgagttcaggaaggcccgc
gtgccgatcctgatcgcgaccgacgtcgccgcgcgcgggatcgacattccgggcgtcagt
cacgtcatcaactacgaactgcccaacgttccggagcaatatgtccaccgcatcgggcgg
accgcgcgcgccgggcgtgacggggtcgccatcgccttctgtgccgaggacgagcgcgcc
tatctgaaggacatccgcaagaccactggcgcggaactggagcgcctgccgctccccgac
aacttccgcgcggtggtggaaggcgaggggccggaaaagccggcgccgcgccagccgatg
aagcgcgtgcagccgcgcccgctcgggcagcgcaagccgcagggcgagcgtcgcgagggc
gagaacaggggcgaacgccgtccgcagcagggcaagccgcagggccgtccgcagcatgat
cgcagcggcggtggcggcgagcgtcgtccgcaacagggcgaacagcgcccgcagggtgat
cgccgccagccttcggccaaggccgggcagggcggccgtccgggcggcggtggccgtccg
caaggtcagggtcacggcggcggcgccaacggcgggggcggcaatcgcaaccgcgggcgt
cgcggcggcggtggcggtggcggcgggcgtccgcgtgccgcacagggctga
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