Porphyrobacter sp. CACIAM 03H1: CBR61_10675
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Entry
CBR61_10675 CDS
T09981
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
porc
Porphyrobacter sp. CACIAM 03H1
Pathway
porc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBR61_10675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porc03019
]
CBR61_10675
03016 Transfer RNA biogenesis [BR:
porc03016
]
CBR61_10675
Enzymes [BR:
porc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CBR61_10675
Messenger RNA biogenesis [BR:
porc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBR61_10675
Transfer RNA biogenesis [BR:
porc03016
]
Prokaryotic type
tRNA degradation factors
CBR61_10675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
ASJ91333
LinkDB
All DBs
Position
2228208..2230598
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AA seq
796 aa
AA seq
DB search
MPSRSQVLDFIQSSDIPAGKREIAKAFGLKGQEKIALKALLKDMAEEGLIDGRKSAYHRM
GGVPKVTTLKIVDLDEGDLIAEPDNWDPEAPGKPPRLVVREPKMPRNAKSAKRPPALKRG
DRVLARTEETERGWVAHVMKKLPARTEGLMGVVEIDRTGKAWLAPVDKRVRQSAPIADLG
NAEDGQLVIAERVGRSERAGVKVIEVVGDPLAPRSFSLIAIAKHGIPHIFPEEVLEEAPR
AAKLKLSEKAREDLRHLPIVAIDPADARDHDDAIWAEPDGQGGFNAVVAIADVSFYVRPG
SALDREARKRGNSVYFPDRVVPMLPEVLSADVCSLKEGEDRAAMACHLHINADGKVSSFR
FTRALVRIAHNIAYEDAQAIIDGEIRSPRAKSRGAEEGVSTDDRMSAVHPEPAEGLDPNG
DVAEILANLWAAWRALSAAREARDPLELELPERRVVLDEQGRITSIAIRERLDAHRVVED
FMIAANVAAAKALEAKTAPVVYRIHEPPSREKLIALRDYLATMGKKLALGQVVTPGLFNR
MLKDISDEAEKALVMEAVLRSQTQAYYGPANAGHFGLSLGSYAHFTSPIRRYSDLLVHRA
LVDAYKLEQPAPPGSIPATSGLSDRDRASLEQVSDAISQTERRAMEAERDTIDRYVAAWL
SNRVGEVFDTRITGVQAFGFFATIVGLGGDGLVPISTLGGEYFRHDEAAQALVGSDSGTT
YASGDRLKLKLAEANPLTGALKFVLPDADANAIEPRGNRPPERRRVPGGAPPKKAGKFMV
GKRGRPGNIRHQGRKK
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgccgagccgcagccaagtgctcgacttcatccagtcctccgacattcccgccggcaag
cgggagatcgccaaggctttcggcctcaaggggcaggagaagatcgcgctcaaggccctg
ctcaaggacatggccgaggaaggcctgatcgacggcaggaagagcgcctatcaccgcatg
ggcggtgtgccgaaggtgacgaccctgaagatcgtcgacctggacgagggcgatctgatt
gccgagcccgacaactgggaccccgaggcccccggaaagccgccgcgcctggtcgtgcgg
gaaccgaagatgccgagaaacgccaagtccgccaagcggccgcccgccttgaagcgtggc
gaccgggtgcttgcccggaccgaggagaccgagcggggctgggtcgcccacgtgatgaag
aaactcccggcgcggaccgaggggctgatgggcgtggtcgagatcgacaggaccggcaag
gcctggcttgcacccgtcgacaagcgggtgcgccagtccgcccccatcgcagatctgggc
aatgccgaggacggccaactggtgatcgccgagcgcgtgggtcgctccgaacgcgcgggc
gtgaaggtgatcgaggtggtgggcgatccgctcgcgccacgcagcttcagcctcatcgcc
atcgccaagcacggcattccgcacatcttccctgaggaggtgctggaagaggccccgcgc
gcggcgaagctcaagctgtccgagaaggcgcgcgaggacctgcggcacctgcccatcgtc
gccatcgaccccgccgacgcgcgcgatcatgacgatgcgatctgggccgagcccgacggt
cagggcgggttcaacgccgtggtcgccatcgccgatgtgagcttctacgtccggcccggc
tcggcgctggaccgtgaggcgaggaagcgcggcaattcggtctatttccccgaccgggtg
gtgccgatgctccccgaggtgctctcggccgatgtctgctcgctcaaggagggcgaggac
cgcgcggcgatggcctgccacctgcacatcaatgccgacggcaaggtatcgagcttccgc
ttcacccgcgcgctggtgcggattgcgcacaatatcgcctacgaggacgcgcaggcgatc
attgatggagaaatccgttcgcctcgagcgaagtcgagaggcgctgaggaaggtgtctcg
accgacgacagaatgtcggcagttcatcctgagcctgccgaagggctcgacccgaacggg
gacgtggccgaaatcctcgccaacctttgggccgcatggcgcgcgctgtcggcggcgcgc
gaggcgcgcgatccgctggaactcgagctgccggaacgccgcgtggtgcttgacgagcag
gggcgcatcacctccatcgccatccgcgaacggctcgatgcgcaccgcgtggtcgaggat
ttcatgatcgcggccaacgtcgccgcagccaaggcgctcgaggccaagaccgcgcccgtc
gtctaccgcatccacgaaccgccgagccgcgagaagctgatcgccctgcgcgattatctc
gccacgatgggcaagaagctggccttggggcaggtggtgacgccaggcctgttcaaccgg
atgctcaaggacatttccgacgaggccgagaaggcactggtgatggaggcggtgctgcgc
agccagacgcaggcctattacgggccggcgaacgcgggacacttcggactgagcctcggc
tcctatgcccacttcacctcgccgatccgtcgctattcggacctcctcgtccaccgcgcg
ctggtcgatgcctacaagctggaacagcccgccccgccggggtcgatcccggccaccagc
ggcctgtccgaccgtgaccgggccagtctcgaacaggtttccgatgcgatcagccagacc
gagcgccgcgcgatggaggccgagcgcgacaccatcgaccgctatgtcgccgcctggctc
tcgaaccgcgtcggcgaggtgttcgacacccgcatcaccggggtgcaggccttcggcttc
ttcgccaccatcgtcggcctcggcggtgacgggctggtaccgatctccacgctgggcggc
gagtatttccgccatgacgaggcggcgcaggcgctggtcggcagcgacagcgggacgacc
tatgccagcggcgaccggctcaagctcaagctcgccgaggccaatccgctcaccggcgcg
ctcaagttcgtgttgcccgatgccgacgcgaacgcgatcgagccgcgcggcaaccgcccg
cccgagcgtcgccgtgtcccgggcggagcgccaccgaagaaagccggaaagttcatggtc
ggaaagcgcggccggcccggcaacatccggcatcaggggcgcaagaaatag
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