Porphyrobacter sp. CACIAM 03H1: CBR61_16425
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Entry
CBR61_16425 CDS
T09981
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
porc
Porphyrobacter sp. CACIAM 03H1
Pathway
porc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBR61_16425 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porc03019
]
CBR61_16425 (recQ)
03400 DNA repair and recombination proteins [BR:
porc03400
]
CBR61_16425 (recQ)
Enzymes [BR:
porc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBR61_16425 (recQ)
Messenger RNA biogenesis [BR:
porc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBR61_16425 (recQ)
DNA repair and recombination proteins [BR:
porc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CBR61_16425 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ASJ92343
LinkDB
All DBs
Position
complement(3464054..3465856)
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AA seq
600 aa
AA seq
DB search
MSAVVPPECHDILHRTFGYPAFRGQQEAVIARVMAGTHTLALMPTGAGKSLCYQVPALAR
AGTAVVISPLIALMHDQIRSARAAGIRAASMTSADSDNAATAEAFRSGELNLLYVAPERA
STPGFQAMLKRAPIALFAIDEAHCVSEWGHDFRPDYRMLRPVLDRFPDVPRLALTATADR
TTRADILKQLGIPDEGLIVAGFDRPNIRYAITPRDNGPRQIADLLQRLEGAGIVYAPSRK
QAEELAAAITRAGRAASFYHAGLEPDRRARVQAEFVASEDMVMVATIAFGMGIDKPDVRF
VIHAGLPKSIEAYYQETGRAGRDGDPAEAHLFWGVSDFARARQWLAEVEPERLPAEQARL
GALAALVEAPTCRRAILLRYFGEHPGEHCGNCDNCLETPRVIDAGELARKLLSAVYRTGQ
SFGIGHVEKVLTGQSDGRIASRGHNRLSVFGIVSPQEAPLLRPLARAMVARGILNATEHG
GLALGLEARPVLKGEAGVTITEPPPRRERRSRRARAGAAGDAPNPVGNPLFEALRAKRKA
LASEHGLPAYVIFHDSVLRDMALQCPETLAELGTIPGVGAKKLETWGSDFIAVVREHLKG
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcggtcgtccctcccgaatgtcacgacatcctccaccgtaccttcggctatccc
gccttccgcgggcagcaggaggctgtgattgcacgggtgatggcaggcacgcacacgctt
gccctgatgccgacgggcgcgggcaagagcctgtgctaccaggttcccgccctcgcgcgg
gcgggcacggcggtagtgatctcgcccctgatcgcgctgatgcacgaccagatccgctcg
gcccgggcggcgggcatccgcgccgcctcgatgacctcggcggattcggacaatgcggcg
accgccgaagccttccgctcgggcgagctcaacctgctctatgttgcccccgaacgtgcc
tcgacgccggggttccaggcgatgctcaaacgcgcgccgatcgccctgttcgccatcgac
gaggcgcattgcgtgtccgaatggggccacgacttccgccccgattaccggatgctgcgc
ccggtgctcgaccgcttcccggacgtgccccgcctcgcgctcaccgccaccgccgaccgc
acgacgcgggcggacattctcaagcagctcggcatcccggacgagggcctgatcgtcgcc
ggcttcgaccggcctaacattcgctacgccatcacgccccgcgacaacggcccgcgccag
atcgccgacctgctccagcggctcgaaggggcggggatcgtctatgccccctcgcgcaag
caggccgaggaactcgcggccgccatcactcgcgccggtcgcgcggcatccttctatcac
gccgggttggagccggaccggcgcgcaagggtgcaggccgagttcgtcgcctccgaggac
atggtgatggtcgccaccatcgccttcggcatgggcatcgacaagcccgacgtgcgtttc
gtgattcacgccgggctcccaaagtcgattgaggcctattaccaggaaaccggccgcgcc
gggcgcgacggcgatccggccgaggcacacctgttctggggcgtctccgatttcgcccgc
gcgcggcaatggctggccgaggtcgagcccgagcgcctgcctgccgaacaggcgcgcctg
ggcgcgctcgccgcgctggtcgaggcgccgacctgccgccgcgcgatcctgctcaggtac
ttcggcgagcatccgggcgagcattgcggcaattgcgacaactgcctggaaacgcccaga
gtgatcgacgcgggcgagctggcgcggaagctcctttcggcggtctatcgcaccggccag
agcttcggcatcggccatgtcgagaaggtgctgaccggacagagcgacgggcgcatcgcc
tcccgcgggcataaccggctctcggtgttcggcatcgtcagccctcaggaggccccgctg
cttcgcccgctcgcccgggcgatggtggcgcggggtatcctcaacgcgaccgagcacggc
ggcctcgcattggggctggaggcaaggcccgtgctgaaaggcgaggcaggcgtcaccatc
accgaacccccgcccaggcgcgaacgccgcagccgccgggcacgcgcgggcgcagcgggc
gatgcgcccaaccccgtcggcaacccactgttcgaggccctacgcgccaagcgcaaggcg
cttgcatccgagcatggcctcccggcctatgtcatcttccatgattcggtgctgcgcgac
atggcactgcaatgccccgagacgctggcggagctcggtaccattcccggcgtgggggcg
aagaagcttgagacatgggggtcggatttcattgccgtggtgcgggagcacctgaagggc
tag
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