Porphyrobacter sp. LM 6: BG023_11109
Help
Entry
BG023_11109 CDS
T04468
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
porl
Porphyrobacter sp. LM 6
Pathway
porl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
porl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BG023_11109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
porl03021
]
BG023_11109
03400 DNA repair and recombination proteins [BR:
porl03400
]
BG023_11109
Enzymes [BR:
porl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BG023_11109
Transcription machinery [BR:
porl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BG023_11109
DNA repair and recombination proteins [BR:
porl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BG023_11109
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_RND
RPOC_hybrid
BSH_YknX
Apocytochr_F_C
Peptidase_M23
YqfD
YnfE
Motif
Other DBs
NCBI-ProteinID:
AOL93067
LinkDB
All DBs
Position
complement(101449..105750)
Genome browser
AA seq
1433 aa
AA seq
DB search
MNDLTKFTNQLAKPETFDQIQIGIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKYQLLTEDELLEAQDEYGEDAFTAD
IGAEAVRTMLMQLDLEAERDALMDELATTKSALKPKKIIKRLKVVESFIESGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMERQEKHPEYITEADGTKIEKLPRF
SDMAEVHQALETKAVTLHTRIIARVPQADETGVVAMKRFVTTPGRMLIGECLPKNHKVPF
DIINRLLTKREIGDVIDQVYRHTGQKDTVLFADAIMALGFRHAFKAGISFGKDDMIIPDA
KEKLVDETKELVAGYEQQYQDGLITQQEKYNKVIDAWSKCGDMVADAMMAEIKAQPIDPE
TGKEAQINSIYMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEY
FNSTHGARKGLADTALKTANSGYLTRRLVDVSQDCVIVEEDCGTQNALEMRAIVQGGSVI
ASLGERILGRTVAEDILNAATGEVIVPAGTLLDEAMVKEIEAAEVQSAKIRSPLICEAEQ
GVCATCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSHLEAI
SDGRVELHDMPTITDKRGRILSLARNGEIAVIDAEGREREMHKVPYGTVLMFKDGDHVKI
GDRLAEWDPFTLPIITEQSGVVKYQDLAEGITLEEQVDDATGIAQRVVTENRATGRKKKE
DLRPRLTLLGEGDGETEAARYMLAPGTTLSVADGDTVQAGDILARASREAAKTRDITGGL
PRVAELFEARMPKDVSIIAKISGRIEFVREYKAKRKIAIIPEEGEPVEYLIPKTKVIDVQ
EGDYVKKGDTLISGSPNPHDILEVMGVEALAEYLVNEIQEVYRLQGVKINDKHIEVIVRQ
MLQKVEITDGGDTTLLPGEQVDLAEMLEINAKLAKGKQGATGTPVLLGITKASLQTRSFI
SAASFQETTRVLTQAAVEGKKDTLIGLKENVIVGRLIPAGTGAGMNRLRVTANSRDAALK
AAWKKQQDALSATGQREVEPAADAIGSEEKMKAAMAAMAASAPAAEVEDDGEE
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctgaccaaattcaccaaccagctggcgaagcccgaaaccttcgaccagatc
cagatcggcatcgcctcgccggagcgcatccgctcgtggtcctatggcgagatcaagaag
cccgagacgatcaactatcgcaccttcaagccggagcgtgacgggctgttctgcgcgcgc
atcttcggccccgtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgttgaagtcacggtgacaaaggtccgccgcgag
cgcatgggccacatcgaactggccgcgccggtcgcgcacatctggttcctgaagtcgctg
ccctcgcgcatcggcctgctgctcgacatgcagctgaagcagcttgaacgcgtgctctac
ttcgaaagctacatcgtcaccgagccgggcctgaccccgctcgagaagtatcagcttctc
actgaagacgaactgctcgaagcgcaggacgagtatggcgaagacgccttcaccgccgat
atcggcgcggaagccgtgcgtaccatgctgatgcagctcgacctcgaagccgagcgcgat
gcgctgatggacgagctggcgacgaccaagtcggcgctcaagcccaagaagatcatcaag
cgcctgaaggtcgtcgagagcttcatcgaatccggcaaccgcccggaatggatgatcctc
gaagtgatcccggtcattccgcccgaactgcgcccgctggtgccgctcgacggtggccgc
tttgccacctcggacctcaacgacctctatcgtcgtgtgatcaaccgtaacaaccgtctg
aagcgcctgattgaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagcggtcgacgcgctgttcgacaatggccgccgcggccgcgtcatcaccggcgcc
aacaagcgtccgctcaagtcgctgtccgatatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtgaccggtccg
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgtctggatgccaagggtctctccatgaccctgaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatccttgacgaggtgatccgcgagcac
ccggttctgctgaaccgcgcgccgacgctgcaccgtctgggcattcaggcgttcgaaccc
gtgctgatcgaaggcaaggcgatccagctgcacccgctggtctgctcggcgttcaacgcc
gacttcgacggtgaccagatggcggtccacgtgccgctttcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggttctggggatctactacctctcgatggagcggcaggag
aagcacccggaatacatcaccgaagccgacggcaccaagatcgagaagctgccgcgcttc
tcggacatggccgaagtgcatcaggcgctggaaaccaaggcggtcacgctccacacccgc
atcatcgcccgcgttccgcaggccgacgagaccggtgtcgtggcaatgaagcgcttcgtc
accaccccgggccgcatgctgatcggcgagtgcctgccgaagaaccacaaggtgcccttc
gacatcatcaatcgcctgctcaccaagcgtgaaatcggcgacgtgatcgaccaagtgtac
cgtcacaccggccagaaggacaccgtgctgttcgccgacgccatcatggcgctgggcttc
cgccacgcgttcaaggccggcatctccttcggcaaggatgacatgatcatccccgacgcc
aaggaaaagctggtcgacgagaccaaggaactggttgccggttacgagcagcagtaccag
gacggtctcatcacccagcaggaaaagtacaacaaggtaatcgacgcctggtcgaagtgc
ggtgacatggtcgccgacgcgatgatggcggagatcaaggcccagccgatcgatcccgaa
acgggcaaggaagcccagatcaactcgatctacatgatgagccactcgggtgcccgtggt
agcccggcgcagatgaagcagctcgccgggatgcgcggcctgatggccaagccgtcgggt
gagatcatcgagaccccgatcatctcgaacttcaaggaaggtctgaccgttcttgaatac
ttcaactcgacccacggtgcccgtaagggcctcgcggacaccgcgctgaagaccgcgaac
tcgggttacctgacccgtcgtctggtcgacgtgtcgcaggattgcgtcatcgtcgaggaa
gattgcggcacccagaacgcgctcgaaatgcgcgccatcgtgcagggcggttcggtgatc
gcctcgctcggcgagcgtatcctcggtcgcaccgtggcggaggacatcctcaacgcggca
accggcgaagtcatcgttccggcgggcaccctgctcgacgaagcgatggtgaaggaaatc
gaggcggctgaagtgcagtctgccaaaatccgctcgccgctgatctgcgaagccgaacag
ggcgtttgcgcgacctgctacggtcgtgaccttgcccgcgggaccccggtgaacatcggt
gaagctgtcggcgttatcgccgcgcagtcgatcggtgagcccggcacccagctgacgatg
cggaccttccacatcggcggcgcggcgcagctcaacgaaacctcgcacctcgaggcgatt
tcggatggccgcgtcgaactgcacgacatgccgaccatcaccgacaagcgtggccgcatc
ctgagcttggcacgcaacggcgagatcgcggtgatcgacgccgaagggcgcgagcgcgaa
atgcacaaggtgccctatggtacggtgctgatgttcaaggacggcgatcacgtgaagatc
ggcgaccgtctggccgagtgggatccgttcactctgccgatcattaccgaacagtcgggc
gtggtgaagtatcaggatctggccgagggcatcacgctcgaagaacaggtcgatgatgcc
accggcatcgcgcaacgcgtggtgaccgaaaaccgcgcgacgggccgcaagaagaaggaa
gatctgcgtccgcgcctcaccctgctgggtgaaggggacggggaaaccgaagcggcgcgc
tatatgctcgctccgggcacgaccctgtcggttgccgatggtgacacggtgcaggcgggc
gacattctcgcccgtgcgagccgcgaagccgccaagacccgcgacatcaccggcggtctg
ccgcgggtggccgagctgttcgaagcacgtatgccgaaggacgtctcgatcatcgccaag
atttccggccggatcgaattcgtccgcgaatacaaggcgaagcgcaagatcgcgatcatt
cccgaggagggtgaacccgtcgagtacctgatccccaagaccaaggtgatcgacgtgcag
gaaggcgactacgtgaagaagggtgacaccctgatttccggctcgcccaacccgcacgac
atcctcgaggtgatgggcgtcgaagcgctggccgagtatctcgtaaacgagattcaggaa
gtctatcgcttgcagggcgttaagatcaacgacaagcacatcgaagtaatcgttcgccag
atgctgcagaaggtcgagatcaccgatggcggggacaccaccctgctgccgggcgagcag
gtcgatctggccgagatgctggaaatcaacgccaagctcgccaagggcaagcagggcgcg
accggcactccggtgctgctcggcatcaccaaggcttcgctccagacccgcagctttatc
tcggcggcctcgttccaggaaaccacccgcgtgctgacgcaggcggcggtcgaagggaag
aaggacaccctgatcggtctgaaggaaaacgtcatcgttggccgtctcatccccgccggt
accggcgcgggcatgaaccgtctccgcgtaacggccaacagccgcgacgctgccctcaag
gcggcgtggaagaagcagcaggatgccctgtcggcgaccggccagcgcgaagtcgaaccg
gccgctgatgcgatcggctcggaagagaagatgaaggccgcaatggctgccatggcggcc
tctgccccggcggccgaagttgaggacgacggcgaggagtaa
DBGET
integrated database retrieval system
