KEGG   Porphyrobacter sp. LM 6: BG023_111564
Entry
BG023_111564      CDS       T04468                                 
Name
(GenBank) DNA-binding protein HU-beta
  KO
K03530  DNA-binding protein HU-beta
Organism
porl  Porphyrobacter sp. LM 6
Brite
KEGG Orthology (KO) [BR:porl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:porl03032]
    BG023_111564
   03036 Chromosome and associated proteins [BR:porl03036]
    BG023_111564
   03400 DNA repair and recombination proteins [BR:porl03400]
    BG023_111564
DNA replication proteins [BR:porl03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    BG023_111564
Chromosome and associated proteins [BR:porl03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    BG023_111564
DNA repair and recombination proteins [BR:porl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      BG023_111564
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_2 DUF2267 VWA_3 HU-CCDC81_euk_1 2C_adapt
Other DBs
NCBI-ProteinID: AOL94493
LinkDB
Position
1620902..1621174
AA seq 90 aa
MNKNDLISAVADTSGLSKSDAASAVESVFDTITKALSGGDEVRLVGFGTFSVAKRKASTG
RNPRTGEPMKIKASIQPKFKAGKGLKDAVN
NT seq 273 nt   +upstreamnt  +downstreamnt
atgaacaagaacgacctgatcagcgccgtcgccgataccagcggtctgtccaagagcgat
gccgcgagcgcggttgaaagcgtgttcgacacgattaccaaggccctttcgggcggcgac
gaagtgcgtctggtcgggttcggcaccttctcggtggccaagcgcaaggcttcgaccggc
cgtaacccgcgcacgggagagccgatgaagatcaaggcgtcgatccagccgaagttcaag
gcgggcaagggtctgaaggacgcggtcaactaa

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