Porphyrobacter sp. LM 6: BG023_111730
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Entry
BG023_111730 CDS
T04468
Name
(GenBank) ATP-dependent helicase/nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
porl
Porphyrobacter sp. LM 6
Brite
KEGG Orthology (KO) [BR:
porl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
porl03400
]
BG023_111730
Enzymes [BR:
porl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BG023_111730
DNA repair and recombination proteins [BR:
porl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
BG023_111730
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDDEXK_1
BREX_PglY_5th
Motif
Other DBs
NCBI-ProteinID:
AOL94655
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All DBs
Position
1779908..1782946
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AA seq
1012 aa
AA seq
DB search
MAEPRGAGPLIYSIAAHRGFADALVAGLVPRYAAPGFGLARLTLLVPSSRAARTLSEAFI
RHAGANGTNGLLMPRMVMVGDLDLDEQLGAALDPLGTSDIPPACDPVRRWLTLDRLIAEE
RAAEGMDPLPGRVRLNLARDIARAIDRLLVEEKRPEDLLGDAVLDSLAGVAEHWKHSIRL
FARVNARWQVELAERGEVDAATRRNLLFDRAARRWKDTPPQHPIVAAGVTSAAPALARLL
RVIAELPDGAVVLPDLDLAMDDAAWDELGRAGLADQAGGTVFGTSDALTHPQYHLKLLLN
RMGVNREEVRPWHRRGPTAADPARSRAISALFLPPEASRSWAKLEASDRRLSGVRLMTSP
TLEVEAQAVAMLVREAIEQPERRVAVVTADRGLARRIVQHLARWNVVADDSAGRPLALTP
AGRLFGLLAEIAARGPAADIVVATFGHPLVRSVDAETRQAWLTGLRAFDRELRGPALAPG
LGPLGKAAAEAKQADWWAEAAALIAPLSDWPKQIALAEALTILADCAERLAGSAAWERED
GRALGSMIEELRGQSQALGTVVESADIAAILRDAMDAVAVRPGYGGHPRVSIYGLLEARM
ARADLIICAGLNEGSWPQPPAADPLLAPAVLRALGVPGAEFRIGLAAHDLAGALGAPEVV
LSRALRDAAGPTLPSRFVLRVEALLGKDLLGEHREAAIPALLPHLDRARPRTEPYPRPAP
DPGSDLRDVTIKVTALDRLLGDPYQFYAQAILGLKQMAPLAADPFSDPALRGTLVHAILD
KWHRARRSDTGLAIGPFARDYFAAEQVHPLFRALWQPRLIAALERFEQWIEADAKEGRSV
LASEISGEMTFDGVKVIGRADRIDRLADGTLGIVDYKTGRVPSKNQVEAGFALQLGLLGL
IAEHGRFENARTGEVVTGEATDFEYWSFGKEDGGFGKRDRPIKKDRAKTGVLPEDFLPHH
AEMLAEAIRNYIKGRTPFTARENPDYQGFNEYDQLMRLEEWLASVMAVGEAS
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
ttggctgaaccgcgcggcgccggccctctgatctattcgatcgccgcgcatcgcgggttt
gccgacgcgctggttgccggactggtgccacgctatgccgcgccgggcttcgggctcgca
cgcctgacgctgctggtcccgtcgagccgcgccgcgcgcaccctttccgaggccttcatt
cgccacgccggggccaatggcacgaacgggctgctgatgccgcgcatggtgatggtcggc
gatctcgacctcgatgaacaacttggcgcagcgctcgaccctctggggacttcggacata
cccccggcctgcgatccggtgcggcgctggctgacgctcgaccggctgatcgccgaggaa
cgcgcagccgagggaatggacccgctcccgggccgggtgcggctcaaccttgcgcgcgac
atcgcccgcgcgatcgaccgtctactggtcgaggaaaagcgccccgaagatctgctgggt
gacgctgtgctcgatagccttgctggggtggccgagcactggaagcattcgatccgcctg
ttcgcccgcgtcaatgcgcgctggcaggtcgaacttgccgagcgcggtgaagttgacgcc
gcaacgcgccgcaacctgctgttcgaccgggcggcgcggcgctggaaggataccccgccg
cagcatccgattgtcgccgccggcgtgaccagtgctgccccagcgctcgcacggctgctg
cgtgtgattgcggaacttcccgatggcgcggtggtactccccgatctcgaccttgcgatg
gatgatgccgcatgggacgaactggggcgcgcaggccttgccgatcaagcgggcggcaca
gtgttcggcacttcggacgcgctcacccatccgcagtatcatctgaagctgctgttgaac
cgcatgggcgtgaaccgcgaggaagtgcgaccgtggcaccgccgtggccccactgctgcg
gatccggcgcgcagccgggcaatatccgcactgtttttgccgcccgaggccagtcggtcg
tgggcaaagctcgaggcctctgaccggcggcttagcggagtgcggctgatgaccagtccg
acgctggaggtcgaggcacaggcggtcgccatgttggtccgcgaggcgatcgagcagccc
gaacgacgcgtagccgttgtaaccgctgatcggggcctcgcgcgccggatcgttcagcat
cttgcgcgctggaatgtggtcgccgacgattcggcagggcggccgctggctctgaccccg
gcgggcaggctgtttggcctgctggcggagatcgctgcccgggggcctgcggccgacatt
gtcgtggcgacattcgggcatccattggttcgctcggtcgatgccgagacgcgccaggcc
tggctcacgggtctcagagcctttgaccgggagctgcgcggaccagctcttgcccccgga
ctcgggccgctgggcaaggcggcggccgaggcaaagcaggcggattggtgggccgaagca
gcggctctgatcgccccgctgtcggattggcccaagcaaatcgcgttggctgaagcgctt
acgatccttgccgattgcgccgaacgtctcgcgggaagcgcggcatgggagcgcgaagat
ggccgcgcgctgggcagcatgatcgaggagctgcgcgggcagtcgcaagcgctcggcacg
gtcgtcgagagcgccgatatcgccgcaatcctgcgcgatgcaatggacgcggtggcggtg
cgtccgggctatggcgggcatccgcgcgtgtcgatctatggcctgctcgaggcgcggatg
gcgcgggctgatctgattatctgcgcaggcctgaacgaaggcagctggccgcagccgccg
gccgccgatcccctgctcgcgcccgccgtgctgcgcgcgctgggcgtgccgggggcggag
ttccggatcgggctggccgcccatgaccttgccggagcgctcggcgcccccgaagtggtg
ctcagccgcgccttgcgcgatgccgcagggccgactttgccatcacgctttgtacttcgg
gtcgaagcgttgctgggcaaggacctacttggcgagcatcgcgaggcagcaattccggcg
ctgttgccccatcttgatcgtgcgcgtccccgtaccgagccctatccgcgcccggcacct
gatcccggctccgacttgcgcgatgtgaccatcaaggtgactgcgctggatcgacttctg
ggtgatccctaccagttctacgcgcaggcaattctggggctcaagcagatggcaccgctc
gctgctgatccgttcagcgatccggcgctacgcggaacgcttgtccacgccatcctcgac
aagtggcaccgggcgcgtcgcagcgatacggggctggcaatcggaccgttcgcgcgggac
tatttcgctgccgaacaggtccaccccttgtttcgcgcgttgtggcaaccacgcctgatc
gccgctctcgagcggtttgagcagtggatcgaggctgatgccaaggagggtcgcagcgtg
ctcgcaagcgagatttccggcgagatgacgtttgacggggtcaaggtgattggccgcgcg
gaccggatcgaccggctggcggatgggacgctaggaattgtcgattacaaaactggccgg
gtgccgagcaagaatcaggtcgaggcgggcttcgcgctccagcttggtttgcttggtctg
attgcggagcatgggcggttcgaaaatgcgcgcactggcgaggtggtaacgggcgaggcg
accgacttcgagtattggtccttcggcaaggaagatggcggcttcggtaagcgggaccgg
ccgatcaagaaggacagagcgaaaaccggcgtgctccctgaagacttccttccgcaccac
gccgaaatgctggcggaggcgatccgcaactacatcaagggccgcacccctttcaccgcg
cgagagaaccccgattatcaggggttcaacgaatatgatcagctgatgcggctcgaggag
tggttggcttcggtcatggccgtgggtgaggcatcatga
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