Porphyrobacter sp. LM 6: BG023_111853
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Entry
BG023_111853 CDS
T04468
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
porl
Porphyrobacter sp. LM 6
Pathway
porl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
porl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BG023_111853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
porl03021
]
BG023_111853
Transcription machinery [BR:
porl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BG023_111853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF4168
THOC7
Disulph_isomer
Motif
Other DBs
NCBI-ProteinID:
AOL94772
LinkDB
All DBs
Position
complement(1908092..1910128)
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AA seq
678 aa
AA seq
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MAEKEDAPLIDLNEASIKKLISKARKRGYVTYDELNEALPSGEMSPDQIEDIQTALSEMG
VQIVETDEDAEAEAEGEDGEAEDIVAADDDDDDDDDGERKGPAKDARAGNKKLATGERTD
DPVRMYLREMGAVELLSREGEIAIAKRIEAGRDMMIMGLCESPITFHAIIQWSEALNNGD
MQLREILDLDAMLSKEPPAEKMAEGAEDDDDDEISEATAGPTIREDDEVEDEPEADADED
EDGEPRQKREEEEEEDNTLSLAQMEAALKPEALERFARITTLFNAFEKLQAERVDTLAAG
NAFPAAKEGKYEQLREDLTAEVESVQFHATKIEFLVDNLYAFNRRLTTLGGQMLRLAERH
KIKRMDFLNAYVGNEMDDAWIKERAKKDKKWAAFAEREEDAIERIRSEIADIAAQTGMSL
GEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEEG
REPTPEEMAQRLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAA
IQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKAL
RKLKHPSRSRKMRSFLDQ
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggccgagaaggaagacgccccgctgatcgacctcaatgaggcttcgatcaagaagctc
atcagcaaggcgagaaagcgcggctatgtcacctatgacgagctcaacgaggcgctgccc
tcgggcgagatgagccctgaccagatcgaggacatccagaccgcgctgtcggaaatgggc
gtgcagatcgtcgaaaccgatgaagacgccgaggcggaagccgagggcgaggacggcgag
gccgaagacatcgtcgccgccgatgacgacgatgatgatgacgatgacggcgagcgcaag
ggcccggccaaggacgcgcgcgcgggcaacaagaagctcgcgaccggcgaacgcaccgac
gatccggtgcggatgtacctgcgcgaaatgggcgcggtcgaactcctcagccgcgaaggc
gaaatcgctatcgccaagcgcatcgaggccggccgcgacatgatgatcatgggcctgtgc
gaaagcccgatcaccttccacgcgatcatccagtggtccgaagcgctcaacaacggcgac
atgcagctgcgcgagatcctcgatctcgacgcgatgctctccaaggaacccccggccgag
aagatggccgaaggcgccgaggatgacgacgacgacgaaatctcggaagccaccgccggc
ccaaccatccgcgaggacgacgaggtcgaggacgagcccgaggcggacgccgacgaggac
gaggacggcgagccccgccagaagcgcgaagaggaagaggaagaagacaacaccctctct
ctcgcccagatggaagccgcgctgaagcccgaggcgctggagcgtttcgcgcgcatcacc
acgctgttcaacgccttcgaaaagctccaggccgaacgcgtcgatacgctcgcggcgggc
aacgccttcccggcagccaaggaaggcaagtacgaacagctgcgcgaagacctcaccgcc
gaggtcgaaagcgtgcagttccacgcgaccaagatcgaattcttggtcgacaacctctac
gccttcaaccgccgcctgaccacgctgggcgggcagatgctgcgccttgccgagcgtcac
aagatcaagcgcatggacttcctcaatgcctatgtcggcaacgagatggacgatgcctgg
atcaaggaacgcgccaagaaggacaagaagtgggccgccttcgccgagcgcgaagaagac
gcgatcgagcgcatccgctcggaaatcgccgatatcgcggcgcagaccggcatgagcctc
ggcgagttccgccgcatcgtgaacatggtccagaagggcgagcgcgaggcgcgtatcgcc
aagaaggaaatggtcgaggcgaacctgcgtctggtgatttccatcgccaagaagtacacc
aaccgcggcctgcaattccttgatctcattcaggaaggcaacatcggccttatgaaggcg
gtcgacaagttcgaataccgccgcggctacaaattcagcacctatgcaacctggtggatc
cgtcaggcgatcacccgctcgatcgccgatcaggcgcgcaccatccgtattccggtgcac
atgatcgaaacgatcaacaagctggtccgcacgagccgccagttcctccacgaggaaggc
cgcgagccgacgccggaagaaatggcgcagcgcctctccatgccgctggagaaggtccgc
aaggtgatgaagatcgccaaggagccgatctccctcgaaaccccgatcggggacgaggaa
gactcgcacctgggcgatttcatcgaggacaagaacgcaatcatccccgtggatgccgcg
atccaggcgaacctcaaggaaaccgtcacccgcgtgctcgcctcgctcaccccgcgcgaa
gaacgcgtgctgcggatgcgcttcggtatcgggatgaacaccgatcacacgctggaagaa
gtcggccagcagttcagcgtgacccgcgaacgtatccgccagatcgaagccaaggcgctg
aggaagctcaagcacccgagccggtcgcggaagatgcggtcgttcctcgatcagtaa
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