Porphyrobacter sp. LM 6: BG023_111943
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Entry
BG023_111943 CDS
T04468
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
porl
Porphyrobacter sp. LM 6
Pathway
porl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG023_111943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porl03019
]
BG023_111943
03016 Transfer RNA biogenesis [BR:
porl03016
]
BG023_111943
Enzymes [BR:
porl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BG023_111943
Messenger RNA biogenesis [BR:
porl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BG023_111943
Transfer RNA biogenesis [BR:
porl03016
]
Prokaryotic type
tRNA degradation factors
BG023_111943
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
AOL94861
UniProt:
A0A1D7NM67
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All DBs
Position
1998643..2000952
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AA seq
769 aa
AA seq
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MPKPPKLPQGMPTRQQVLDFIQSSDIPAGKREIAKAFGLKGQEKIKLKALLKDMAEEGLI
DGSKSAFHRMGGVPKVTTLRIVDVDEGDLIAEPDNWDPEAPGKPPRLVIREPKMPRGAKS
AKRPPALRRGDRVLARTEETERGLIAHVMKKLPSRTEGLMGIVEIDKTGKAWLAPVDKRV
RQSTPIADRGEAEEGQLVIAERVGRSERAGVKVVEVVGDPLAPRSFSLIAIAKHGIPHIF
PEEVLEEAPRAAKLKLSEKAREDLRHLPIVAIDPADARDHDDAIWAEPDGQGGFNAVVAI
ADVSFYVRPGSALDREARKRGNSVYFPDRVVPMLPEVLSADVCSLKEGEDRAAMACHLHI
SAEGKVTSFRFTRALVRIAHNIAYEDAQKAVDDGNPPAFLANLWAAWKALAAARHARDPL
ELELPERRVVLDEQGRIASIAIRERLDAHRVVEDFMIAANVAAAKALEAKTAPVVYRIHE
PPSREKLIALRDYLATMGKKLALGQVVTPGLFNRMLKDISDEAEKALVMEAVLRSQTQAY
YGPANAGHFGLSLGSYAHFTSPIRRYSDLLVHRALVDAYKLEQPAPPGSIPATSGLSDRD
RASLQQVSDAISQTERRAMEAERDTIDRYVAAWLSARVGEVFDTRITGVQAFGFFATIVG
LGGDGLVPISTLGGEYFRHDEAAQALVGSHSGTTYASGDRLKLKLAEANPLTGALKFVLP
DADMGRIETRGARPQERRKGPGGPPKTAGKFMVGKRGRPGNIRHQGRKK
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagccccccaaactcccccaagggatgccgacgcgccagcaggtgctcgacttc
atccagtcctccgacattcccgcgggcaagcgcgagatcgccaaggccttcgggctgaag
gggcaggaaaagatcaagctcaaggccctgctcaaagacatggccgaggaggggttgatc
gacggttcgaaaagcgcctttcaccgcatgggcggggtgccgaaggtgacgacgctcagg
atcgtcgatgtggacgagggcgatctgattgccgagcccgacaattgggatcccgaagcc
cccggcaagccaccccgtctggtcatccgcgagccgaaaatgcccagaggtgctaaatct
gccaagcgcccgccggcgctgcggcgcggtgaccgcgtgctcgcccgcaccgaggagacc
gagcggggcctcatcgcccatgtgatgaagaaactgccctcgcgaaccgaagggctgatg
ggcatcgtcgagatcgacaagaccggcaaggcctggctcgcgccggtcgacaagcgcgtg
cgccagtccactcccatcgccgatcgcggcgaggccgaagaaggccagctggtgattgcc
gaacgcgtgggccgttcggaacgcgcaggggtgaaggtggtggaggtggtgggcgatccg
ctcgccccgcgtagcttcagcctcatcgcgattgccaagcacggcatcccgcacatcttc
cccgaagaggtgctggaggaagccccgcgtgcggccaagctcaagctttcggaaaaggcg
cgcgaagacctcaggcacctgccgattgtcgcgatcgacccggctgacgcgcgcgaccat
gacgatgcgatctgggccgagcccgacgggcagggcggcttcaacgcggtggtcgcgatt
gccgatgtgtccttctacgtccgccccggctcggcgctcgaccgcgaggcgaggaaacgc
ggcaattcggtctatttccctgaccgcgtcgtgccgatgctgcccgaggtgctctcggcc
gatgtctgctctttgaaggaaggcgaggaccgcgcggcgatggcgtgtcacctgcacatc
agcgcagagggcaaggtcaccagcttccgcttcacccgcgcactggttcggatcgcgcac
aacatcgcttacgaggatgcgcagaaggccgtggacgatggcaacccgcccgcgtttctc
gccaacctttgggccgcgtggaaggcgctcgccgccgcacgccatgcccgcgatccgctc
gagcttgaactccccgagcgccgcgtggtgctcgacgagcagggacgcatcgcctcgatc
gcgatccgcgaacggctcgatgcccaccgcgtggtcgaggatttcatgatcgccgccaac
gtcgctgcggccaaggcactagaagccaagactgcgccggtcgtctatcgcattcacgaa
ccgccgagccgcgagaagctgatcgcgctgcgcgattatctcgcgacgatgggcaagaag
ctggcgctggggcaggtcgtcactcccggcctgttcaaccggatgctcaaggacatcagc
gacgaggccgaaaaagcgttggtgatggaagcggtgctccggagccagacgcaggcctat
tacgggcctgccaatgccgggcatttcgggctgagcctcgggtcttacgcgcacttcacc
tcgccgatccgccgctattccgatcttctggtgcaccgcgcgctggtcgatgcctacaag
ctggagcagcccgccccaccgggttcgatccccgcgaccagcggcctttcggaccgcgac
cgcgcctcgctccagcaggtctcagacgcgatcagccagaccgagcgccgcgcgatggaa
gccgagcgcgataccatcgaccgctatgtcgcggcatggctgtcggcgcgggtgggcgag
gtgttcgatacccgcatcaccggggtgcaggccttcggctttttcgccaccatcgtcggg
ctcggcggggatgggctggtgccgatctcgacgctgggcggcgaatacttccgccatgat
gaagccgcgcaggcgctggtcggttcgcacagcgggacgacctatgccagcggcgacagg
ctgaagctcaagctcgccgaagccaatccgctaaccggcgcgctcaaattcgtgttgccg
gatgcggatatgggccgcatcgaaacacgcggcgcaaggccgcaagaacggcgcaagggg
ccgggtgggcctccgaaaacggccggcaagttcatggtgggcaagcgcggtcgtccgggc
aatatccgccatcagggacgcaagaagtag
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