Porphyrobacter sp. LM 6: BG023_112047
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Entry
BG023_112047 CDS
T04468
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
porl
Porphyrobacter sp. LM 6
Pathway
porl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG023_112047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porl03019
]
BG023_112047
03009 Ribosome biogenesis [BR:
porl03009
]
BG023_112047
Enzymes [BR:
porl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BG023_112047
Messenger RNA biogenesis [BR:
porl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BG023_112047
Ribosome biogenesis [BR:
porl03009
]
Prokaryotic type
rRNA processing factors
BG023_112047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOL94963
UniProt:
A0A1D7NME4
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All DBs
Position
2105402..2108068
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AA seq
888 aa
AA seq
DB search
MATRMLIDARHPEETRVAVLQGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPKADRDALLAEEAEAAEEEERLRAEEEAEGISPGSEYDA
EDDSGEALAEDFAENGVEEIDTSDKDDVATIEGGASDDDESAEDENGEDDAGEETGEENG
QERGRRGRGRRRQGKGGDSAKGRSRAKQVDEVRAKRLELRRRYKIQDVIQRRQVLLVQVV
KEERGNKGAALTTYLSLAGRYTVLMPNSSHGGGISRKISSTSDRKRLKDMVSDLKLPKSM
GLIVRTAGMSRTKPEIKRDFDYLARVWDEIREKTLASVAPALIHSDSDLIKRAIRDIYNK
EIEEVVVEGAEGYASAKAFMKLLMPSHARRVKAYSDPVPLFQRYGAEDQLRAMYDPMVQL
KSGGYLIINPTEALVSIDINSGRSTKEHGIEATALHTNLEAAREIARQLRLRDMAGLVVI
DFIDMEYSSNVRKVEKAMKDALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEATTRACP
HCDGTGLVRTASSAGLSALRLIEDEAAKGKGTQIRLAASTEAAIYLLNEKRADLVEIEHR
YGVSVEVVPEGEDEGAKMSVSSSGPRPAQAPKFDPIIDEEDDDDLPEEEDDFAEEEAEER
EPRQPHRERPEGDDEGGRKKKRRRRRGGRNRNRGDREDGGEGAAGDADDSDADGEDGGES
QSERQNASEDGEGRPKKRRRRGGRGRKRRDADGNMIEGDAQDNDADAGESDSETGEAEAE
TATPVAEAEAAEEAPAEKPKRKRAPRKPKVVEAEAEAAPVEEAPAPAEDTPAADEKPKRK
RAPRKAKAADPAPAETAEVSAAPPAEPAAEDDGDGKPRRGWWQRTFGE
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgcttatcgatgcgcgccacccggaagaaacccgggtggcggttctg
caaggcaaccggattgaggaattcgatttcgaatctgccgaacacaagcagatcaaaggc
aatatctatctcgccaaggtaacccgggtcgaaccctcgctgcaggcggctttcgtcgac
tttggcggcaatcgtcacggcttcctcgccttcagcgaaatccatcctgattattaccag
atcccgaaggcggatcgcgacgcgctgctggccgaagaggccgaagctgccgaggaagaa
gagcgtctgcgcgccgaggaagaggccgaaggcatctcgcccggttcggaatacgacgcc
gaggacgacagcggcgaagcgctcgccgaagacttcgctgaaaacggcgtcgaggaaatc
gacacctccgacaaggacgatgtcgccaccatcgaaggcggtgcatcggacgacgacgaa
agcgccgaagacgagaacggcgaagatgacgccggcgaagaaactggcgaggaaaatggt
caggagcgcggtcgccgcggccgtggccgtcgccgtcagggcaagggcggagacagcgcc
aagggccgcagccgtgccaagcaggtcgacgaagtccgcgccaagcggctcgaactgcgt
cgccgttacaagatccaggacgtgatccagcgccgacaggtgctgctggtgcaggtcgtc
aaggaagagcgcggcaacaagggcgcggcgctgaccacctatctcagcctcgcgggccgt
tacaccgtgctgatgcccaactcgtcgcacggcggcgggatcagccgcaagataagctcg
accagcgatcgcaagcggttgaaggacatggtctcggacctcaagctccccaagagcatg
ggtctcatcgtccgcaccgcgggcatgagccgcaccaagcccgagatcaagcgcgacttc
gattacctcgctcgcgtatgggacgagatccgcgagaagaccctcgcttcggtcgcgccc
gcgctgatccattcggacagcgacctgatcaagcgcgcaatccgcgacatctacaacaag
gaaatcgaggaagtcgtcgtcgaaggtgcggaaggctatgcctcggccaaggccttcatg
aagctcctcatgcccagccacgcccggcgggtgaaggcctattccgatccggtgccgctg
ttccagcgctatggggcggaagaccagctgcgcgcgatgtatgatccgatggtgcagctc
aagagcggcgggtacctgatcatcaacccgaccgaagcgctggtgtcgatcgacatcaac
tccggccgttcgaccaaggagcacgggatcgaggcgaccgcgcttcacaccaaccttgaa
gcggcacgggaaatcgcccgccagctgcgcctgcgcgacatggccggcctcgtcgtcatc
gacttcatcgacatggagtattcctccaacgtccgtaaggtcgaaaaggcgatgaaggac
gcgctcaagaacgatcgcgcgcgcatccaggtgggccgcatctcgagcttcgggctgatg
gaaatgagccgccagcgcctgcgcaccggcgtgcttgaagccaccacccgcgcctgtccg
cattgcgatggcaccggccttgtccgcaccgcctcgtcggcgggcctgtcggcgctgcgt
ctgatcgaggacgaagcggccaagggcaagggcacgcagatccgtctggcggcgagcacc
gaagcggcgatttatctcctcaacgagaagcgcgccgatctggtcgagatcgagcaccgt
tacggcgtcagcgtagaagtcgtgccggaaggcgaggacgaaggcgccaagatgagcgtg
tcgagctccggcccgcgtcccgcgcaagctccgaagttcgatccgatcatcgacgaagaa
gacgacgatgatctgcccgaggaagaggacgatttcgccgaggaagaggctgaagagcgc
gaaccgcgtcagccgcaccgcgaacggcccgagggtgatgatgaaggcggccgcaagaag
aagcgccggcgtcggcgtggtggtcgcaaccgcaaccgcggcgaccgcgaggacggcggc
gaaggtgcagccggtgatgcggacgatagcgatgccgatggcgaggacggcggcgagtcg
cagtccgagcgtcagaacgcgagcgaagacggcgaaggccgccccaagaagcgccgtcgg
cgcgggggtcgcggtcgcaagcgtcgtgacgccgatggcaacatgatcgagggcgacgcg
caggataacgacgcggatgctggcgagagcgacagcgaaacgggcgaggcagaagccgag
accgcgacgcctgtggccgaagccgaagcggccgaagaagcgcctgccgaaaagcccaag
cgcaagcgggctccgcgcaagcccaaggtcgtcgaagccgaggccgaagctgctccggtg
gaagaagccccggcccccgccgaggatactcccgccgctgacgagaagcccaagcgcaag
cgggctccgcgcaaggccaaggcagccgatcccgctccggcagaaaccgccgaagtcagt
gcagctcccccggcggaacctgcggcagaagacgatggcgacggcaagccgcgccgcggc
tggtggcagcgcactttcggcgaataa
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