Porphyrobacter sp. LM 6: BG023_112087
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Entry
BG023_112087 CDS
T04468
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
porl
Porphyrobacter sp. LM 6
Pathway
porl03030
DNA replication
porl03430
Mismatch repair
porl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
porl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BG023_112087
03430 Mismatch repair
BG023_112087
03440 Homologous recombination
BG023_112087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
porl03032
]
BG023_112087
03400 DNA repair and recombination proteins [BR:
porl03400
]
BG023_112087
Enzymes [BR:
porl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BG023_112087
DNA replication proteins [BR:
porl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BG023_112087
DNA repair and recombination proteins [BR:
porl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BG023_112087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
COE1_HLH
HHH_3
DUF655
Motif
Other DBs
NCBI-ProteinID:
AOL95003
LinkDB
All DBs
Position
complement(2146663..2150163)
Genome browser
AA seq
1166 aa
AA seq
DB search
MPFAPFVPLRVLSSYSMLEGAIDPKDIAKLAKERGFPAIAICDRNGLYGIMAFAAACKSE
GVQPIIGALLGVARGDEARTVDYLPLFAQDDTGYNNLCHLVSSAHLDRPLELDPHVTLGA
LEGRTDGLIALTGAGEGGLTRLLAEGQHDAAARLADRLEMLFPGRLYVELARHGDPVCAR
ADEALVDLAYARDLPLVATNPANFAEPHMHKAHDAMLCIAHSTQIEADDRPRSNPQAFVK
SASMMDEAFADLPEATANTLVIAQRCAFAPPYRKPILPSLAGDLAGEARMLAEDSRKGLE
ERLAAYPDLTEEERKVYFDRLEFEIDVIVKMGFPGYFLIVADFIKWAKDQGIPVGPGRGS
GAGSAVAWALTITDLDPIRLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGS
DHVAQIITFGKLKARAVLRDCGRILQMSYGQVDRLCKMVPNHPTDPWPLPRALNGAADFR
REYDNDGEVKRLVDLAMQLEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFD
MKYVESSGLVKFDFLGLKTLSVLRKAVDLLEQRGITIDLGALALDDPAVYSLMQAGNTVG
VFQLESEGMRRTLKAVKPTNFGDIIALVSLYRPGPMDNIPLFGQRKAGVVPIEYPHEKLE
GILSETYGIFVYQEQVMQAAQVLAGYSLGDADLLRRAMGKKVQAEMDAQRGRFVEGCKAV
SDIDAKRANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPEEFYAASMCFDMHQ
SEKLSVFVDDARRYPNGNGGVEVLAPDINASHAEFTVEQTDTGYAVRYALAGIRNVGEKA
MDAIVAERAAGGPFASLKDLFERLPQGTMNRRQLEGLICAGALDALEPDRGLLYANADML
MAVADAAMRERSSGQAGLFGGDDAAVDDLRLQPAEPWSRTERMAKERENFGFYFSAHPVQ
QYRDVASANGARTYQSLMEAGAPPGGRGSAQMAALVEGITKARTRKGGTFVRADFSDSSG
QFSAACFEEALVPQFERWAQDGECLLLTVELDAPNPDEPPRLTVRGARPLAAVSGATAMQ
LSADITSVEALRELQIELGTARGDRPTGTGEVIVRLALADGGQARMRLGSSFVLNGELAE
RLAAVEGIANVSLVPLKKRANLRLVA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgccgttcgccccgttcgtccctctgcgcgtgctgtcgtcctattcgatgctcgaaggg
gcgatcgatccgaaggatattgccaagctcgccaaggaacgcggctttcccgcgatcgcc
atctgcgaccgcaacgggctttacgggatcatggcctttgccgctgcgtgcaagagcgag
ggcgtgcagcccatcatcggcgccttgctgggggtcgcacggggtgacgaggcgcggacg
gtcgattacctgccgctcttcgcgcaggacgatacgggctataacaacctgtgccatctg
gtctcctcggcgcaccttgatcgcccgctggagcttgatccgcacgtcacgctgggcgcg
cttgaaggccgcaccgatgggctgattgcgctgaccggtgcgggcgagggcgggctgacc
cgcctgctggcggaaggccagcacgatgccgcggcgcggctggctgaccggctggagatg
ctgttccctgggcggctttacgtcgaactcgcccgccacggcgatccggtctgcgcgcgt
gcggacgaggcgttggtcgatctcgcctatgcccgcgatctcccgctggtggcgaccaac
cctgccaacttcgccgaaccgcatatgcacaaggcgcatgacgccatgctgtgcatcgcc
cattcgacccagatcgaggccgatgatcgcccgcgctcgaacccgcaggccttcgtcaaa
tcggcgagcatgatggacgaggccttcgccgatctgcccgaagcgaccgccaataccctc
gtcatcgctcagcgctgcgcctttgcgccgccctatcgcaagccgatcctgccgagcctt
gcaggtgacctggcgggcgaagcgcggatgctggcggaggattcgcgcaaaggtctggaa
gaacgcctcgccgcctatcccgatctcaccgaggaagagcgcaaggtctactttgaccgc
ctcgaattcgagatcgacgtgatcgtgaagatgggcttccccggctacttcctgatcgtg
gccgacttcatcaagtgggccaaggatcagggtattccggtggggccggggcgtggttcg
ggtgcgggctccgcggtggcctgggcgctcaccatcaccgatctcgatccgatccggctt
gggctgctgttcgaacgcttcctcaaccccgaacgcgtgtcgatgcccgacttcgatatc
gacttctgcgaaacgcggcgcggcgaggtgatccgctacgtgcagcgcaaatacggcagc
gatcacgtcgcgcagatcatcaccttcggcaagctcaaggcgcgtgcggtgctgcgcgat
tgcggacgcattttgcagatgagctacgggcaggtggatcgcctgtgcaagatggtgccc
aaccacccgaccgacccgtggccgctgccccgcgcgctcaacggggcggcggatttccgg
cgtgaatacgacaatgatggcgaggtgaagcgcctcgtcgacctggcgatgcagctcgaa
ggcctgccgcgcaattcctccacccacgcggcgggtgtggtgatcggcgatcgcccgctg
gcgcagcttgtgccgctctaccgcgatccgcgctcggacatgccggtgacgcagttcgac
atgaagtatgtcgaaagctcgggtctggtgaagttcgacttcctcggcctcaagaccctc
tcggtgctgcgcaaggcggtcgatctgctcgaacagcgcggcatcacgatcgatctgggc
gcgctggcgctcgatgatccggcggtctacagcctgatgcaggcgggtaacaccgtgggc
gtgttccagctggaatcggaagggatgcggcgcacgctgaaggcggtgaagccgaccaat
ttcggcgacatcatcgcgctcgtctcgctctaccgccccggcccgatggacaacatcccg
ctgttcggccagcgcaaggcgggcgtggtgccgatcgaatacccgcacgaaaagctcgaa
ggcatcctgtcggaaacctacggcatcttcgtctatcaggaacaggtgatgcaggccgcg
caggtgcttgccgggtattcgctcggcgatgcagacctcttgcgccgcgcgatgggcaag
aaggtgcaggccgagatggacgcccagcgcggccgcttcgtcgaaggctgcaaggcggtc
tcggacatcgatgccaagcgcgcgaacgagctgttcgacttgatcgacaagttcgccggc
tatggcttcaacaaatcgcacgctgccgcctacgcgctgctcgcttaccagaccgcgtgg
ctcaaggcgcattatccggaagaattctacgccgcttcaatgtgcttcgacatgcaccag
tcggaaaagctcagcgtcttcgtcgatgatgcgcggcgttatccgaacggcaacgggggc
gtcgaggtgctggcgcccgatatcaacgccagccacgccgagttcactgtcgagcagacc
gacacgggctatgcggtgcgctatgcgctggcaggcatccgcaatgtcggcgagaaggcg
atggacgcgatcgtcgcagagcgggcggcgggcgggcccttcgccagccttaaggatctg
ttcgagcggctgccgcagggcacgatgaaccgccgccagctggaaggactgatctgtgcg
ggcgcgcttgatgcgctcgagccggaccgcggcctgctttacgccaatgccgatatgctg
atggcggtggcggatgcggcgatgcgcgaaagatcgagcgggcaggcgggcctgttcggc
ggcgacgatgcggcggtcgacgatctgcgtctgcaaccggccgagccgtggagccgcacc
gagcgtatggcgaaggagcgcgagaacttcggcttctacttctccgcccacccggtgcag
caatatcgcgatgtcgcctcggccaatggcgcgcgcacctatcagagcctgatggaagct
ggcgcgcctcccggcgggcgcggatcggcacagatggcggcgctggtcgaaggcatcacc
aaggcgcgcacccgcaagggcggcaccttcgtacgggcggacttctccgattcctcgggc
cagttctcggctgcttgcttcgaggaagcgctggtgccgcagttcgagcgctgggcgcag
gacggcgaatgcctgctgctgacagtcgagctcgacgcgcccaaccccgacgagccgcct
cgcctcaccgtgcgcggcgcgcgtccgctggcagcggtgagcggcgcgaccgcaatgcaa
ctcagcgccgatatcacttcggtcgaggccttgcgcgaactccagatcgagcttgggacg
gctcggggcgatcgtccgaccggcactggcgaggtgatcgtccgacttgcgctggctgac
ggtgggcaggcacggatgcgccttggcagcagcttcgtgctcaatggcgaactggccgag
cggctggcggcggtcgaggggatcgccaatgtttcgctggtgccgctcaagaagcgcgcc
aacctgcgtctcgtcgcctga
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