Porphyrobacter sp. LM 6: BG023_112257
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Entry
BG023_112257 CDS
T04468
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
porl
Porphyrobacter sp. LM 6
Pathway
porl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
porl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BG023_112257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
porl03400
]
BG023_112257
DNA repair and recombination proteins [BR:
porl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BG023_112257
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BG023_112257
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
DnaJ_CXXCXGXG
AAA_16
AAA_29
AAA_21
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
AOL95171
LinkDB
All DBs
Position
complement(2319265..2322168)
Genome browser
AA seq
967 aa
AA seq
DB search
MSLTKISVRGAREHNLKGIDIDLPRDALIVVTGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLEMMQKPDVEHIDGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWARVGTP
YSPATGEPISAQTVSQMVDRVMALPEGTRLYLLAPVVRGRKGEYRKELAEWQRQGFTRVR
IDGEIYPIEEAPALDKKFKHDIEVVVDRIAVKDGLQTRLAESFETALKLAEGLAYVDLAD
GVVPGREDEGKGGAMKGAGLPPNRIVFSEKFACPVSGFTIEEIEPRLFSFNAPQGACPAC
DGIGEKMLFDPQLVVPNEGLSLKQGAVVPWAKSNPPSPYYMQVLASLAKAYGFDLTTPWK
DLAPDQKLIILHGTGGMPVPLTFKDGRREYTVNKAFEGVIGNLNRRLMQTESAWMQEELA
KYQTAQACETCGGKRLNEKALSVKVAGTDIATPVQMSVADAKAWFLRLDAQLTPQQSQIA
KAILKEINERLGFLDNVGLDYLNLDRTSGTLSGGESQRIRLASQIGSGLSGVLYVLDEPS
IGLHQRDNDRLLETLKRLRDLGNTVIVVEHDEDAIRAADHIVDLGPGAGVHGGEVVAQGT
LKDILKAKGSLTADYLTGKRKIDVPTTRRKGNGHHIVVKNARANNLKGVTAKIPLGTFTC
ITGVSGSGKSSLTIDTLQAGAARVLNGARVIAGAHDAITGLEMCDKVIEIDQSPIGRTPR
SNPATYTGAFTQIRDWFAGLPESLARGYKPGRFSFNVKGGRCEKCQGDGLIKIEMHFLPD
VYVTCEECHGKRYNRETLEVKFKGHSIADVLDMTIEDAEEFFKAVPSIREKMRMLNEVGL
GYVKVGQQATTLSGGEAQRVKLAKELARRSTGQTLYILDEPTTGLHFEDVRKLLEVLHRL
VDGGNSVVVIEHNLDVIKTADWIIDLGPEGGVRGGEIVAEGVPEKVVLEPRSFTGQYLAP
LLGRRMR
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaccaaaatctccgtccgcggtgcgcgcgagcacaatctcaagggtatcgat
atcgatctgccgcgcgatgcgctgatcgtggtcactggcctttcgggcagcggcaagtcg
agcctcgccttcgacaccatctatgccgaagggcagcggcgctacgtggagagcctcagc
gcctatgcgcgccagttcctcgagatgatgcagaagcccgatgtcgagcatatcgacggg
ctgtcccctgcgatcagcatcgagcagaagaccaccagccgcaacccgcgctctacggtc
gcgacggtaaccgagatctacgactatatgcgccttctgtgggcgcgcgtgggcacgccc
tattcgcccgccaccggagagccgatttccgcgcagacagtcagccagatggtcgaccgg
gtcatggccctgcccgaaggcacgcggctctacctgctcgcgcccgtggtgcgcgggcgc
aagggcgaataccgcaaggagctggccgaatggcagcggcagggtttcacccgcgtgcgg
atcgacggggagatctatccgatcgaggaggcccccgcgctcgacaagaagttcaagcat
gacatcgaggtggtggttgatcgcatcgcggtgaaggacgggctgcaaacccgcctcgcc
gaaagcttcgaaaccgcgctgaagctcgccgaggggctggcctatgtcgatctcgccgat
ggcgtggtgccggggcgcgaggacgaagggaagggcggggcaatgaagggcgcaggtctg
ccgcccaatcgcatcgtcttctccgaaaagttcgcctgtccggtctccggcttcaccatc
gaggaaatcgagccgcggctgttctcgttcaacgcgccgcagggggcctgcccggcctgc
gacgggatcggcgagaagatgctgttcgatccgcagctcgtggtgccgaacgaggggctg
agcctgaagcagggggcggtggtgccctgggccaagtccaacccgccgtcgccctattac
atgcaggtgctcgccagcctcgccaaggcatacggcttcgatctgacgaccccgtggaaa
gacctcgcccccgaccagaagctcatcatccttcacggcacaggcgggatgccggtgccg
ctgaccttcaaggacggccgccgcgaatacaccgtcaacaaggcgttcgagggcgtgatc
ggcaacctcaaccgccgcttgatgcagaccgaaagcgcgtggatgcaggaggagctcgcc
aagtaccagaccgcgcaggcctgcgagacctgcggcggcaagcggctcaatgaaaaggcg
ctctcggtcaaggtcgccggcaccgacatcgccacgcccgtccagatgagcgtcgccgat
gccaaggcgtggttcctccggctcgacgcgcagctcaccccccagcagagccagatcgcc
aaggccatcctgaaagagatcaacgagcggctgggcttcctcgacaatgtcggcctcgac
tacctaaacctcgatcgcaccagcggcaccctcagcggcggggagagccagcgcatccgc
ctcgccagccagatcggcagcgggctgtcaggcgtgctctacgtgctcgacgagcccagc
atcggcctccaccagcgcgacaacgaccgcctgctcgaaacgctcaaacgcctgcgcgat
ctcggcaacacggtgatcgtcgtcgagcatgacgaggacgcgatccgcgcggctgaccat
atcgtcgatctcggccccggcgcgggcgtgcatggcggcgaggtggtggcgcagggcacc
ctcaaggacatcctcaaggccaagggcagcctcaccgccgattacctcaccggcaagcgc
aagatcgacgtgccgaccacccgccgcaagggcaacgggcaccacatcgtggtcaagaac
gcgcgcgccaacaacctcaagggcgtgaccgcgaaaatcccgctcggcaccttcacctgc
atcaccggcgtatcgggatcgggcaaatcctcgctcaccatcgataccttgcaggcgggc
gccgcgcgcgtgctcaacggggcgcgggtgatcgcgggggcgcatgacgcgatcaccggg
ctcgagatgtgcgacaaggtgatcgagatcgaccagtcccccatcggccgcaccccgcgc
tccaaccccgccacctacaccggcgccttcacccagatccgcgactggttcgcgggcctc
cccgaaagcctcgcacgcgggtacaagccggggcgcttctccttcaacgtcaagggcggg
cgctgcgagaagtgccagggcgacggcctcatcaagatcgagatgcacttcctccccgat
gtctacgtcacctgcgaggaatgccacggcaagcgttacaaccgcgaaacgctggaggtg
aagttcaagggccactcgatcgccgacgtgctcgacatgacgatcgaggatgccgaggag
ttcttcaaggccgtgccctcgatccgcgagaagatgcggatgctgaacgaggtgggcctc
ggctacgtcaaggtcggccagcaggcgacgacgctatcgggcggcgaggcgcagcgcgtg
aagctcgccaaggaactcgcccgccggtcaaccgggcagacgctctacatcctcgacgag
ccgacgacggggctgcatttcgaggatgtgaggaagctgctggaggtgctgcaccggctg
gtcgatggcgggaactcggtcgtggtgatcgagcacaacctcgacgtgatcaagaccgcc
gactggatcatcgatctggggccggaaggcggcgtgcggggtggggagattgtggcggag
ggtgtgccggagaaggtcgtgttggagccgcggtcgtttacggggcagtatctagcgccg
ttgttggggcggcgaatgagatag
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