Porphyrobacter sp. LM 6: BG023_112597
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Entry
BG023_112597 CDS
T04468
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
porl
Porphyrobacter sp. LM 6
Pathway
porl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG023_112597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porl03019
]
BG023_112597
03016 Transfer RNA biogenesis [BR:
porl03016
]
BG023_112597
Enzymes [BR:
porl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BG023_112597
Messenger RNA biogenesis [BR:
porl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BG023_112597
Transfer RNA biogenesis [BR:
porl03016
]
Prokaryotic type
tRNA degradation factors
BG023_112597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AOL95507
LinkDB
All DBs
Position
complement(2658805..2661093)
Genome browser
AA seq
762 aa
AA seq
DB search
MFDTKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKFSAAGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEINVIAQVLSF
DGETEADIVAMIAASAALTISGVPFMGPIGAARVGFVDGEYTLNPKQDKALAEGRLDLVV
AATDTAVMMVESEAKELTEAEMLGAVMFAHDEIRKVIGAIVELAEKAAKDPWVVDLSDNT
ADIKAKLKDLVGKDIAAAYKLTDKSARSNALNEARAKAKAAFADETPQTQMVAIKTMKKV
EADIVRTAILKEGSRIDGRKLDQVRPIEAIVGFLPRTHGSSLFTRGETQAICTTTLGTKD
SEQMIDGLEGLSYSSFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALNPVLPSKED
FPYTIRVLSDITESNGSSSMATVCGGCLSMMDAGVPIKAPVSGIAMGLILEGSDFAVLSD
ILGDEDHLGDMDFKVAGTAEGITTMQMDIKIAGITQEIMAKALEQAKAGRMHILGEMAKA
LTGARTEVSKHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKISSS
NLDEIEAAKKWILGIVEEAEVGKIYNGKVVNIVDFGAFVNFMGGKDGLVHVSEMRNERVE
KPTDVVSEGMEVKVKVLEIDQRGKVRLSMRVVDQETGEELEDTRPPREPREPRGDRGDRG
GDRRGPRGDRGGRGGDRGGRGGDRGGRDRDSGPAGLPDFLKD
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacacgaaaaccgtatcgctggagtggggcggaaagaccctcactctggaaacc
gggcgtattgcccgtcaggccgatggcgccgtgctggcgacctatggcgaaaccgtggtg
ctgtgcgctgtcactgccgccaagagcgtcaaggaagggcaggacttcttcccgctcacc
gtgcactatcaggaaaagttctcggctgccgggcgcatcccaggtggcttcttcaagcgt
gaacgcggcgcgaccgaaaaggaaacgctcaccagccgcctgatcgaccgtccgatccgt
ccgctgttccccgaaggcttctacaacgaaatcaacgtgattgcgcaggtcctgtcgttc
gacggcgagaccgaggccgatatcgtcgcgatgatcgcggcttcggctgcactgaccatt
tcgggcgtgcccttcatgggcccgatcggcgctgcgcgcgtcggctttgtcgatggcgaa
tacacgctcaacccgaagcaggacaaggcgctcgccgaaggccgcctcgacctcgtcgtc
gctgccaccgacacggccgtgatgatggtcgaatccgaagccaaggaactgaccgaagcc
gaaatgctcggcgcggtgatgttcgcgcatgacgagatccgcaaggtcatcggcgcgatc
gtcgaactggccgaaaaggctgccaaggatccgtgggttgtcgatctttcggacaacacc
gccgacatcaaggcgaagctcaaggacctcgtcggcaaggatatcgccgccgcctacaag
ctcaccgacaagtcggcgcgttcgaacgcgctgaacgaggcgcgggccaaggccaaggct
gcgttcgcggacgaaaccccgcagacccagatggtcgcgatcaagactatgaagaaggtg
gaagccgacatcgttcgcaccgccatcctcaaggaaggttcgcgcatcgatggccgcaag
ctcgatcaggttcgcccgatcgaagcgatcgtcggcttcctgccgcgcacccacggctcg
tcgctgttcacccgcggcgaaacccaggcgatctgcaccaccacgctcggcaccaaggat
tccgagcagatgatcgatggtctggaaggcctgagctattccagcttcatgctgcactac
aacttcccgccctattcggtcggtgaagtgggccgcttcggcgcgccgggtcgccgcgaa
gtcggccacggcaagctcgcatggcgcgcgctcaaccccgtgctgccgagcaaggaagac
ttcccctacaccatccgcgttctgtcggacatcaccgagtcgaacggctcgtcgtcgatg
gcgaccgtgtgcggcggctgtctgtcgatgatggatgcaggcgtgccgatcaaggcgccg
gtgtcgggcatcgcgatgggcctgatcctcgaaggcagcgactttgccgttctgtcggac
atcctgggtgacgaagatcacctcggcgacatggacttcaaggtggccgggaccgccgaa
ggcatcaccacgatgcagatggacatcaagatcgccggcatcacgcaggagatcatggcc
aaggcgctcgagcaggcgaaggccggccgtatgcacatcctcggcgaaatggccaaggcg
ctgaccggtgcccggaccgaagtcagcaagcacgcaccccgcatcgagacgatccagatc
gacaagtcgaagatccgtgatgtcatcggcaccggcggcaaggtgatccgcgagatcgtc
gctgaaaccggcgccaaggtcgacatcgacgatgaaggcgtgatcaagatctcgtcctcg
aacctcgacgagatcgaagcggccaagaagtggatcctcggcatcgtcgaggaagctgaa
gtcggcaagatctacaacggcaaggtcgttaacatcgtcgacttcggtgcgttcgtgaac
ttcatgggcggcaaggacggcctcgtgcacgtctcggaaatgcgcaacgagcgcgttgaa
aagccgaccgatgtcgtctccgaaggcatggaagtgaaggtcaaggttctcgagatcgac
cagcgcggcaaggtccgcctgtcgatgcgcgtggttgaccaggaaaccggcgaagagctg
gaagacacccgtccgccgcgcgaaccgcgcgagccgcgcggggatcgtggtgaccgcggc
ggtgatcgtcgtggtccgcgcggtgaccgtggtggtcgcggcggcgatcgtggtggacgc
ggcggtgaccgcggcggccgtgatcgcgacagcggcccggccggtctgcctgacttcctg
aaggactga
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