Porphyrobacter sp. LM 6: BG023_11430
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Entry
BG023_11430 CDS
T04468
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
porl
Porphyrobacter sp. LM 6
Pathway
porl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG023_11430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
porl03021
]
BG023_11430
03019 Messenger RNA biogenesis [BR:
porl03019
]
BG023_11430
Transcription machinery [BR:
porl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BG023_11430
Messenger RNA biogenesis [BR:
porl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BG023_11430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
OB_RNB
AAA_22
NACHT
ATPase_2
AAA_25
S1CSD-TOTE-2
AAA
AAA_14
GpA_ATPase
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOL93384
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All DBs
Position
416058..417323
Genome browser
AA seq
421 aa
AA seq
DB search
MHLKDLKRKTPAELVAMAEELGVEGASTMRRQDLLFSILRELAEDEEYEEKIMGIGTIEV
LQDGFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPRDGERYFALTTLS
KVNFDDPDAVRLRTNFDNLTPLYPEQKLTLDSFDPTVKDKSARVIDIIAPQGKGQRALIV
APPRTGKTVLLQNIARAITDNHPEVFLIVLLVDERPEEVTDMQRSVKGEVISSTFDEPAN
RHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
LDVGKSGTRKEELLVEKDKLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNADFFDTMN
Q
NT seq
1266 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcaaggacctcaagcgcaaaaccccggccgagctggtcgcgatggcggaagaa
ctgggcgttgaaggcgcctcgaccatgcggcgccaggatctgctgttcagcatcctgcgc
gaactcgccgaggacgaggaatacgaagaaaagatcatgggcatcggcaccatcgaggtg
cttcaggacggcttcggcttcctgcgctcgcccgaagcgaactatctcgccgggccggac
gatatctatgtctcgcccaaccaggtccgcaaatggggcctgcgcaccggcgataccgtc
gaaggtgaaatccgtgcgccgcgcgatggcgagcgctactttgcgctgaccacgctctcc
aaggtcaatttcgatgaccccgatgcggtgcgtctgcggaccaatttcgacaacctcacc
ccgctttaccccgaacagaagctgacgctcgacagcttcgatccgacggtgaaggacaag
agcgcgcgggtgatcgatatcatcgcgccgcagggcaagggccagcgcgccctgatcgtc
gccccgccgcgtacgggtaagaccgtgctgctccagaacatcgcccgcgcgattaccgac
aatcaccccgaggtgttcctgatcgtcctgctggtcgacgaacgccccgaggaagtcacc
gacatgcagcgcagcgtgaagggcgaggtcatctcctcgactttcgacgagcccgccaac
cgccacgtgcaggtcgccgaaatggtgatcgagaaggccaagcgccttgtcgaacacaag
catgacgtggtgatcctgctcgattcgatcacgcgcctcggccgcgcctacaacaccgtg
gttccgtcctcgggcaaggtgctgaccggcggtgtggacgccaacgcactccagcggccc
aagcggttcttcggcgccgcgcgcaacatcgaggaaggcggcagcctctcgatcatcgcc
accgcgctgatcgacacgggcagccgcatggacgaagtcatcttcgaagagttcaagggc
accggtaacagcgaaatcgtgctcgaccgcaaggtcgcggacaagcgcatcttccctgcg
ctcgatgtcggcaagtccggcacccgcaaggaagagctgctggtcgagaaggacaagctc
tccaagatgtgggtgctgcgccgcatcctgatgcagatgggcaccgtagatgcgatggag
ttcctgctcgacaagatgaaggattcgaagaccaacgcggatttcttcgataccatgaac
cagtaa
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