Panulirus ornatus (ornate spiny lobster): 139745733
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Entry
139745733 CDS
T10834
Symbol
Caf1-55
Name
(RefSeq) chromatin assembly factor 1 p55 subunit isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03082
ATP-dependent chromatin remodeling
porn03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139745733 (Caf1-55)
03083 Polycomb repressive complex
139745733 (Caf1-55)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
porn03036
]
139745733 (Caf1-55)
Chromosome and associated proteins [BR:
porn03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
139745733 (Caf1-55)
Histone modification proteins
HAT complexes
HATB complex
139745733 (Caf1-55)
HDAC complexes
Sin3A-HDAC complex
139745733 (Caf1-55)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
139745733 (Caf1-55)
PRC2.2
139745733 (Caf1-55)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
139745733 (Caf1-55)
Heterochromatin formation proteins
Other heterochromatin formation proteins
139745733 (Caf1-55)
Chromatin remodeling factors
NuRD complex
139745733 (Caf1-55)
NuRF complex
139745733 (Caf1-55)
NuRF complex (fruit fly)
139745733 (Caf1-55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD_LRWD1
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
eIF2A
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_DCAF12
Beta-prop_RIG_1st
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
AftA_C
Motif
Other DBs
NCBI-GeneID:
139745733
NCBI-ProteinID:
XP_071512338
LinkDB
All DBs
Position
62:11814348..11841932
Genome browser
AA seq
464 aa
AA seq
DB search
MTDKEGAKVGDGGALAPVHAAPDLPTTVAVAEVAPVQRLQDTFDDAVEERVINEEYKIWK
KNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQ
LPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTP
SSDVLVFDYTKHPSKPDPSGECHPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW
DINATPKENRVIDAKTIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRANNTNKP
SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLSLKLHSFAMHKDEIFQVVQ
VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW
NPNEPWVICSVSEDNIMQVWQMAENIYNDEEPETPASELESGAS
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgacggataaagaaggagcaaaggtaggggatggtggtgcccttgcgcctgtgcatgcg
gcaccagacctcccgacaaccgtggccgtggcagaggtagcacctgtgcagcgtctgcaa
gacactttcgacgatgctgtggaggagcgagttattaatgaggagtacaaaatatggaag
aagaatacacctttcttgtatgaccttgtcatgactcatgccctagaatggccttctctc
acagctcagtggctacctgatgttacaaggcctgaaggcaaggactacagcattcatcgg
ttgatcctcggtacacacaccagtgatgaacagaatcatcttcttatcgcctcagtacag
ctaccaaatgaagatgcccaatttgatgcatcacattatgataatgaaaaaggagagttt
ggaggctttggatctgttagtggaaagattgaaattgagataaagataaaccatgaagga
gaagtaaatagagctcgttacatgcctcaaaacccttgtgttattgccaccaagactcca
tccagtgatgtccttgtctttgactacacaaaacacccctctaaaccagacccatcagga
gaatgccacccagatctgaggcttcgtggccatcaaaaagaagggtatgggttatcgtgg
aatccaaacttgaatggttaccttcttagtgcttcagatgatcacaccatatgcttatgg
gatattaatgctacaccaaaggaaaacagagttattgatgcaaaaactatcttcacagga
cacacagcagttgttgaggatgtagcgtggcatctcctgcatgaatcattgtttggttca
gtagcagatgaccaaaaactaatgatctgggatactcgagccaataatacaaacaaacct
tcacacacagttgacgcccatactgctgaagttaattgcctttcctttaatccatattca
gaatttattttagctactggcagtgctgacaagacggtcgctctgtgggatttacgtaat
ctgagcttgaagcttcactcgtttgccatgcacaaggacgaaatcttccaggtggtacag
gttcaatggtcacctcacaatgaaacaattctagcaagttcgggcactgaccgacggctg
catgtatgggacctcagcaagataggagaagaacagagtgctgaggacgcagaagatggc
cccccagaactgctgttcattcatgggggccatactgccaagatatctgatttctcatgg
aatccaaatgagccttgggtcatatgctcagtcagtgaagataacatcatgcaggtctgg
cagatggcagaaaatatctacaatgatgaggaaccagagactccagcttcagaactggaa
tcaggtgcatcttaa
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integrated database retrieval system
