Panulirus ornatus (ornate spiny lobster): 139746380
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Entry
139746380 CDS
T10834
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139746380 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
porn03041
]
139746380 (Sf3b1)
03036 Chromosome and associated proteins [BR:
porn03036
]
139746380 (Sf3b1)
Spliceosome [BR:
porn03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
139746380 (Sf3b1)
Complex B
139746380 (Sf3b1)
Complex C
U2 SnRNP specific factors
139746380 (Sf3b1)
Chromosome and associated proteins [BR:
porn03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
139746380 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UME
DUF2298
Motif
Other DBs
NCBI-GeneID:
139746380
NCBI-ProteinID:
XP_071513675
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All DBs
Position
65:276081..363613
Genome browser
AA seq
1321 aa
AA seq
DB search
MATRKFTAEDVEAHIQEIQNRKAALKAAALQDGLTKDEERVRLDGGGYFDSDIYDIANGN
KYDNYVQSIGVDDLDDEDDDGGTAFGKKGGNSYTAPQLFINEVADKDHDPMAQYKRPTIA
DREDEYRARRIMQVISPERIDPFADGGKTPDMNARTYAHIMQEARLKGEEALIRKTMQER
SKEGTLQVVANGEAPKAAPRKRGRWDQTADDTPQPTKKKSAWEAETPSVARWDETPGRPK
GSETPGATPGQSTRMWDATPGHATPGHETPGHDKPTPSARRNRWDETPKTDRGETPGHSS
GWAETPRTDRGAGDLIQETPTPSASKRRSRWDETPAAQTPVATPSGAMTPSTPHTPNMTP
GMMTPGGITPGGTTPVGPKAIGMATPSPGQLLNMTPEQIHAFRWEREIDERNRPMTDEEL
DALFPPGYEILPPPQGYVPIRTPARKLTATPTPMIGTPQGFYMQKEGMTPKHDDSQPKGN
LPLLKPEDAQYFDKLLQDVDEESLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKA
REFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRVLYKLDDLVRPYVHKILVVIEPLLI
DEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPS
LLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRT
ITALALAALAEAATPYGIESFDSVLKPLWRGIRQHRGKGLAAFLKAIGYLIPLMDGEYAD
YYTREVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEPGYIKEEILPHFFKHFWNHRM
ALDRRNYRQLVDTTVEIANKVGTSEIVNRIVDDLKDENEQYRKMVMETIEKIMANLGAAD
IDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNALGSRVKAYLPQICGTILWRLNNK
SAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKGIVNV
IGMHKMNPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSPREWMRICFELL
ELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETC
SPFTVLPGLMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTSLLEDALMDRDLV
HRQTACAAIKHMAIGVYGFGCEDAMIHLLNYVWPNIFETSPHLVQAFMDSIEGLRVALGP
QKILQYVLQGLFHPARKVRDVYWKIYNNLYIGAQDALVAGYPRIMNMGSNIYGRDELDMV
L
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atggctacacgaaagtttaccgcagaagatgtggaagcacacatacaagaaatacagaat
cgaaaggctgctttaaaggcagcagcgttacaagatgggttaaccaaagatgaagaacgt
gtgagacttgatggagggggctactttgatagtgacatttatgacattgctaatggaaat
aaatatgacaattatgtacagtccattggtgtggatgatcttgatgatgaggatgatgat
ggggggactgcttttggtaagaaaggtggtaactcttacacagcaccccagctcttcatt
aatgaagtggctgataaagatcatgaccccatggcacagtacaaaaggcccaccattgca
gacagagaggatgaatatcgtgcccgtcgtatcatgcaagtcatttcaccagagcgaata
gatccattcgcagatggagggaaaacaccagacatgaatgcccgaacatatgcccacatc
atgcaagaagcacgtctcaaaggtgaagaagctcttatccggaagacaatgcaagaaagg
tcaaaggaagggactcttcaagttgtggctaatggtgaggcgcccaaagctgctccaaga
aagcgtggccgttgggatcagacagctgatgacacaccgcagcctactaagaagaagtct
gcttgggaagcagaaaccccatctgttgctcgttgggatgaaacaccaggtcgaccaaaa
ggaagtgagacacctggagctactccaggacaaagtacccgtatgtgggatgccacacca
ggacatgctaccccaggccatgaaacaccgggacatgacaaacccacaccatcagcacga
cgaaatcgatgggatgaaacaccaaaaacagatcgaggggaaactccggggcacagtagt
ggttgggctgaaaccccacgaactgatcgtggggcaggtgatcttattcaggaaactcca
acaccaagcgcaagcaagcgacgttctaggtgggatgagactcctgcggcacagactcca
gttgccacaccatctggtgctatgaccccttctacacctcacactccaaacatgacccca
ggaatgatgacaccaggaggtattactccaggaggaacaactccagttggaccaaaggcc
attggtatggctactccatcacctggacaacttcttaatatgactcctgagcagatacat
gcattccgctgggaaagagaaatagacgagcgaaatcgccccatgacagatgaggaactt
gatgctctctttcctccaggttatgagattcttccacctcctcaaggatatgtaccaatt
aggacaccagctcgcaaactcacagcaacacctactccaatgattggtacacctcaaggt
ttttatatgcagaaagaaggcatgactccaaaacatgatgactcccaacctaagggtaat
cttccattattaaaacctgaagatgcacagtattttgataaactgctgcaggatgtggat
gaggagagcctaagtccagaagaacagaaagaaaggaaaattatgaaacttttactgaag
attaagaatggcacacctcctatgcgcaaagcagccctccgtcaaatcacagataaggcc
cgcgagtttggtgctggtccattatttaaccagatactgccccttcttatgtctcctaca
cttgaggatcaggaacgccatcttttagtgaaggttatcgatagagttctctataaactg
gatgatcttgttcgtccctatgttcacaagattctggttgtcattgaaccattgcttatt
gatgaagattattatgcacgtgttgaaggtcgagaaattattagtaatctggccaaagca
gctggtttagcaaccatgatttccactatgagacctgatattgataacatagatgagtat
gtacgtaacacaactgctcgggcctttgctgtagtggcatctgctcttggtatcccttcc
ctgctaccctttttgaaggctgtttgcaaaagtaagaaatcatggcaggcccgtcataca
ggtatcaagatcgtgcaacagattgctattttaatgggttgtgctatattgccccatctt
cgctctcttgttgaaattattgaacatggattagttgatgaacagcagaaggtgcgcacc
atcactgcattggccttagctgctttagcagaggctgctaccccatatggtattgagagt
tttgattcagttctgaaacctttatggagaggtatccgtcaacaccgaggcaaaggtctg
gcagctttccttaaagcaattggttacttgattcctcttatggatggagaatatgcagac
tactatacaagagaagtaatgttaattcttattcgtgaatttcagagtcctgatgaagag
atgaagaaaattgtactcaaagtagtaaagcagtgttgtgctactgatggtgttgagcct
ggatatattaaggaggaaattctgccacatttctttaaacacttttggaatcatagaatg
gctcttgaccgtcgtaattaccgccagcttgttgataccacagttgaaattgctaacaag
gttgggacgtctgagattgtcaaccgcattgttgatgacctgaaggatgaaaatgaacag
taccgtaagatggtcatggaaaccattgaaaagatcatggccaaccttggagctgctgat
atagactcccgacttgaagaacaattgattgatggcattttatatgctttccaagagcag
accacagaagatgtagttatgctgaatggctttggtacaattgtgaatgccctaggctct
cgagttaaagcctaccttccccagatctgtggtacaattttgtggcgactgaacaacaaa
tctgcaaaagtccgtcagcaagctgcagatttgatatctcgcattgctgtagtaatgaaa
acttgccaggaggagaaattgatgggtcacctgggtgtggtgttgtatgaatatttgggg
gaggagtacccagaggtactaggttccattttgggtgccttgaagggtattgttaatgtg
attggaatgcacaaaatgaatccacccatcaaagatttacttccacgcctcacaccaatt
ctgaagaacaggcatgaaaaagtgcaagaaaactgtattgatttagtgggacgcattgca
gaccgtgggcctgagtatgtgagtcctcgtgagtggatgagaatttgttttgaattgtta
gaattacttaaggctcataagaaagctatcaggagagccaccgtcaacacatttggttac
attgccaaagctattggcccacatgatgttcttgccacattgctcaataatctcaaagtt
caggaacgtcaaaaccgtgtgtgtacaactgtagccattgctatagttgccgaaacatgc
tcaccctttactgtcctcccaggcctcatgaatgagtatagagttcctgagcttaatgtt
caaaatggtgttctgaagtctctgtcgttcctctttgaatacattggagaaatgggaaaa
gactacatttatgctgtcacttctctcttagaagatgcccttatggatcgagaccttgtt
cacaggcagactgcatgtgcagccattaagcacatggctattggagtgtatggatttggc
tgtgaagatgcaatgattcaccttttgaattatgtgtggccaaatatttttgaaacctct
cctcacttggttcaagcatttatggatagcattgagggacttcgtgtggctttaggacct
cagaagattctgcaatatgtcctccagggactcttccacccagccaggaaagttcgtgat
gtgtactggaaaatttacaataacctttatattggtgcccaagatgcccttgtggctggt
tatcctcgcattatgaacatgggaagcaatatatatggcagagatgaacttgacatggtt
ttataa
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