Panulirus ornatus (ornate spiny lobster): 139748642
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Entry
139748642 CDS
T10834
Symbol
RtcB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
porn03016
]
139748642 (RtcB)
Enzymes [BR:
porn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
139748642 (RtcB)
Transfer RNA biogenesis [BR:
porn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
139748642 (RtcB)
Prokaryotic type
tRNA splicing ligases
139748642 (RtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
139748642
NCBI-ProteinID:
XP_071517973
LinkDB
All DBs
Position
5:complement(28330992..28414227)
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AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLERLSPSCWRIKKGFQPNMNVDGIFYVNDHLEKLMFEELRNACRPGSV
GGFLPGMKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMDDPKAVVSPGGVGFD
INCGVRLLRTNLTEADVVPIKEQLAQSMFDHIPVGVGSKGIIPMTARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMAQADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIEQKGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDGIDTNDRQLACARIK
SNEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFQMSPDDLDMHVIYDVSHNIAKIE
QHWVDGKLRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
METFGSTCHGAGRALSRAKSRRNLDYTEVLIKLQEQGISIRVASPKLVMEEAPESYKNVT
DVVDTCHSAGISKKCIKLRPIGVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgcgacagtacaacgaagagctaaaataccttgaacggctgagtcccagctgt
tggcgaatcaagaaaggtttccaaccaaatatgaatgtggatggcatattctatgtaaac
gaccatcttgaaaaattaatgttcgaggagttgcggaatgcttgccgccctggatcggtt
ggaggtttcttacctggtatgaagcagattgccaatgttgctgctctccctggcatcgtt
ggaagatctgttggtttgccagatgtccattcaggatatggctttgctattggcaatatg
gcagcatttgatatggatgaccccaaagctgttgtctccccgggtggtgttggatttgat
atcaattgtggggtccgtctgttgcgtacaaaccttactgaagctgatgttgttcccatc
aaggagcagttagcccagtccatgtttgatcacatcccagtaggtgttggatcaaagggt
atcattcctatgacagctcgtgatttagaagaagcacttgagatgggtatggattggtca
ctcagagaaggatatatttgggcagaagataaagaacactgtgaggagtatggacgtatg
gcacaggcagatccagctaaagtgtccatgcgagcgaagaagagaggtttgccccagttg
ggcacactgggagcaggaaatcactatgctgagattcaggttgtggatgaaatttatgat
aaatgggctgctagtaaaatgggtatagaacagaaaggccaagtgtgtgtgatgattcac
tctggttctcgtggttttggacatcaggtagctacagatgctcttgttgctatggagaaa
gcaatgaagagggatgggattgacacaaatgaccgacagttagcctgtgctcggatcaag
tcgaatgaaggccaggattacttgaaatccatggctgcagcagcaaactttgcgtgggtg
aatcgctcttcaatgactttcctaagtcgacaggcatttgccaagcagtttcagatgagt
cctgatgacctagacatgcatgtgatctacgatgtctctcataacattgcaaaaattgaa
caacactgggttgatggcaaacttcgcaccttattggttcatagaaagggttcaacaagg
gccttcccacctcaccatcctctgatacctgttgattatcagttgacgggacaacctgtt
ctgattggtggaacaatgggcacgtgttcttatgtattaacaggaacagaacaggggatg
atggagaccttcggatcaacatgccacggagctggtcgtgctctctcccgagccaagtct
cgtcgaaacttggattacacagaagtcctgattaagcttcaggaacaaggtataagcatt
agggtggcatctccaaaattggtaatggaagaagcccccgaatcatacaagaatgttact
gatgttgttgacacttgtcactcggctggcatcagcaaaaagtgcatcaagctccgacca
ataggagtgatcaaaggatga
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