Panulirus ornatus (ornate spiny lobster): 139750182
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Entry
139750182 CDS
T10834
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139750182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
porn03041
]
139750182
Spliceosome [BR:
porn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139750182
Complex C
U5 SnRNP specific factors
139750182
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_SPT8
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
WD40_RFWD3
eIF2A
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
WD_LRWD1
Nbas_N
DUF5888
TibC_1st
Phage_min_tail
WDCP
Motif
Other DBs
NCBI-GeneID:
139750182
NCBI-ProteinID:
XP_071520686
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Position
9:5541326..5551696
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AA seq
345 aa
AA seq
DB search
MDGKRKADYMVMTSQTKKPRHELVVHAGEKGLVQNGPPRSSGLMAPIMQLSGHQGDILCG
KFHPDGEVLATAGMDRQIFFWNVYGECDNFGMLTGHTNAITDMHFSTDGTVLHTASADKT
VMCWDTTSGTRVKKLKGHSSFVNCVHSARRGPSLVVSGGDDCTVLIWDVRKKRPATTLQN
TFQVTAVTFNDTAEQVISGGIDNDMKVWDLRKNGLLYRMRGHNDTVTGISLSPDGSYVLS
NAMDNTVRIWDVRPFAPQERCVKIFQGHQHNFENILLRCSWSPDGRRVAAGSSDRHAYIW
DTTTRHILYKLPGHNGSVNTVEFHPKEPIIMSVSNDKQIFLGEIE
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggatggcaaacggaaagccgattatatggttatgaccagtcagacgaaaaaacctcgt
catgaattggtcgtacacgcgggtgaaaaaggactagttcaaaatggccccccaagatct
agtggtctcatggctcctatcatgcaactctctggccatcagggagacatcttatgtggt
aaattccatcctgatggagaagttcttgctactgctggcatggacaggcagatattcttt
tggaatgtttatggagaatgcgacaactttggaatgctgacaggtcacaccaatgccatc
acagacatgcatttttccacggatggaactgtgctgcacacagcatctgcagataagaca
gtcatgtgctgggacactacaagtggcacacgtgtgaagaagcttaaaggacacagtagt
tttgtgaattgtgtgcatagtgcacggcgtggtccaagtcttgtggtgagtggtggagat
gattgtaccgttttaatctgggatgtgcggaagaaaagaccagctaccacactccagaac
acattccaggtaacagctgtgacctttaatgacacagcagagcaggtcatctctggtggt
atagacaatgacatgaaggtatgggatttaaggaagaatggtttgctgtaccgaatgcgt
ggccataacgataccgtgactggaatcagcctctctccagatggttcttatgttctctca
aatgctatggacaacaccgtgagaatatgggatgtgcgaccatttgctcctcaggaacga
tgtgtgaaaatatttcaaggacatcaacacaactttgaaaatattttattacgctgttcc
tggtcacctgatggtcgtcgtgtggcagctggatcatcagaccgtcatgcttatatctgg
gatacaactacgagacacattctgtataagttgccaggacacaatggttctgtaaatact
gtagaatttcatcctaaagagccaataattatgtctgtatcaaatgacaaacagatcttc
ttaggagaaattgaatag
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