Panulirus ornatus (ornate spiny lobster): 139751364
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Entry
139751364 CDS
T10834
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03020
RNA polymerase
porn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
139751364
09124 Replication and repair
03420 Nucleotide excision repair
139751364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
porn03021
]
139751364
03400 DNA repair and recombination proteins [BR:
porn03400
]
139751364
Enzymes [BR:
porn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
139751364
Transcription machinery [BR:
porn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
139751364
DNA repair and recombination proteins [BR:
porn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
139751364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_5
Motif
Other DBs
NCBI-GeneID:
139751364
NCBI-ProteinID:
XP_071522828
LinkDB
All DBs
Position
11:complement(20256986..20294084)
Genome browser
AA seq
1098 aa
AA seq
DB search
MAGSDSKAPLRQVRRVQFGILSPDEIRRMSVTKGGIKYAEVYENGRPKLGGLMDPRQGCL
DRHTRCTTCAGNMIDCPGHFGHLDLAKPVYHVGFLVKTIKIVRCVCFYCSKLLYNAQHPK
IREIVTKSKGQPRKRLLHVYNLCKDKMICEGGDEVDVTKDPDQPTDLKKTVGHGGCGRYQ
PNVKRVGLDLVAEWKHVNEDTQERKQILSAERLYEIFKHISDEECYLLGMDPKFARPDWM
ILTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELIRNEQSGAAAHIISENIK
NLQFHVATMTDNDMPGMPRALQKSGRPLKAIKSRLKGKEGRIRGNLMGKRVDFSARTVIT
ADPNLGIDQVGVPRSIAQNLTYPEIVTPYNMTKMMELVQRGNNQYPGAKYIVRDNGARID
LRYHPKPSDLHLQSGYRVERHITDGDLIIFNRQPTLHKMSMMGHKVKVLPWSTFRLNLSV
TSPYNADFDGDEMNLHVPQSMETRAEIENLHLTPRMVVTPQSNRPVMGIVQDTLTAVRKM
TKRDVFLEKAEMMNLLMFLPIWDGRMPQPAILKPRPLWTGKQLFSLIIPGNLNLVKTHAT
HPDDEDDGPYKWISPGDTKVLVEHGELIMGILCKKTLGASSGSMLHVAWMELGHEIAGRF
YGNIQTVVNNWLLLEGHSIGIGDTISDPNTYKVIQDTIRKAKDDVIEVIHKAHNDELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQVIQLRYGEDGLAGEFVEFQNLPT
VKLSNRRFEDRYRFDVSNERYLRKLFTEEVVRDILGSPPAVSTLETEWHRLQEDRRILRQ
VFPKGDTKVVLPCNLERMIWNVQKIFHINKRTQTDLSPVRVVEAIQTMLSKCVIVSGNDR
ISRQANENATFLFQCLVRSTLCTKKVSEEYKLTTEAFNWLIGEIETRFNQAIVSISIHQF
DFCVFQKPFQVIYSIFYV
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggctgggtcagacagcaaggctccgctgcgtcaggttcgcagggttcagttcggcatt
ctcagccccgatgaaatccgccgcatgtccgtaaccaagggaggcatcaaatacgctgag
gtgtacgagaatggtcgacccaagctaggcggtctgatggatccgcgtcaggggtgtctg
gaccgacatacccgctgtaccacctgtgccggcaacatgatcgactgtcccggacatttt
ggccacctggacctggccaaacccgtctaccacgtcggcttcttggtcaagaccatcaag
atcgtgcgatgcgtgtgcttctactgcagcaaactcttgtataacgcgcaacacccaaaa
atccgcgagattgtgaccaagtcgaaagggcagccccggaagcggctgctgcacgtgtac
aacctgtgtaaggataagatgatctgtgaaggtggtgacgaggtggacgtcaccaaggac
cccgaccagcccaccgacctcaagaagaccgttggacatggtggctgtggcaggtaccag
ccgaacgtaaagcgtgtgggcctggacctggtggctgagtggaagcatgtcaacgaagac
acacaggaacgcaagcagatcctttctgccgagcggttgtacgagatcttcaaacacatc
tcagacgaggagtgctacctgctggggatggacccgaagtttgcccggccagactggatg
atcctgacggtgctgccggtaccaccactgcccgtgcggccggccgtcgtcatgtacggc
tcggcccgcaaccaggacgacctcacacacaagctggccgacatcatcaaggccaacaac
gagctgatccgcaacgagcagtcaggcgcagccgcccacatcatctcggagaacatcaaa
aacctgcagttccacgtggccactatgacggacaacgacatgcccggcatgcccagggcc
ctccagaagtctggccggcccctgaaggccatcaagtcccgtctcaagggcaaggaaggt
cgcatccgaggtaacctgatgggcaagagggtggacttctcggcccgaaccgtcatcacg
gccgaccccaacctgggcatagaccaggtgggcgtgccaagatccatcgcccagaacctc
acctaccccgagatcgtcacgccctacaatatgaccaagatgatggagttggtgcagcgg
gggaacaaccagtacccaggcgctaagtacattgtccgggacaacggggcgaggatagac
ctgcgctaccacccgaagccgtccgacctgcacctgcagagcggctaccgggtcgagcgt
cacattactgacggcgacctaatcatcttcaaccgacagccaacacttcacaagatgtcc
atgatgggacacaaggttaaggtgctgccgtggtcaacattccggctgaacctgtcggtg
acgtcgccgtacaacgcggacttcgacggcgacgagatgaacctgcacgtaccgcagagc
atggagacccgcgccgagatcgagaaccttcacttgacacccaggatggtggtgacgcct
cagtccaaccggccagtcatgggcatcgtacaggatacccttactgccgtccgcaagatg
accaagagggacgtcttcctcgagaaggcggaaatgatgaacctgctaatgttcctgccc
atctgggatggtcggatgccacagccggccatcttgaagcctcgaccattgtggacaggc
aagcaactcttctcactcatcatccctggcaacctgaacctggtcaagacccacgccaca
cacccagacgacgaggacgatgggccctacaagtggatctcccccggcgacaccaaggtg
ctggtggaacacggggagctgatcatgggcatcttatgcaagaagactctgggggcgagc
tcagggtcgatgttgcacgtagcctggatggagttggggcatgagattgctggtcgcttc
tacggtaacatccagacggttgtgaacaactggttgctcctggaaggtcacagcatcggc
atcggcgacaccatctctgaccccaacacttacaaggtcatccaggacaccatcaggaag
gctaaggatgatgtgattgaggtcatccacaaggcacacaatgatgaactggagcccacc
cctggcaacacactgaggcagaccttcgagaaccaagtgaaccgaatcttgaatgatgcc
cgagacaagactggaggctcggccaagaaatcgttgacagagtataacaacctgaaggcc
atggtggtggctggctccaagggctctaacatcaacatctcgcaggttatcgcctgtgtc
gggcagcagaacgtcgagggcaagagaattcccttcggtttccgaaagaggacgctgcct
cacttcatcaaggacgacttcggcccagagtcccgcggctttgttgagaactcgtatttg
gccggcctcacgccctccgagttctacttccatgccatgggaggccgcgagggcctcatc
gatacggccgtcaagacggcggagactggttacatccagcggcgtctcattaaggccatg
gagagtgtgatggtcaactatgatggcacagtgaggaacagcgtcggccaggtcatccag
ctcaggtacggtgaggacggcctcgctggcgagtttgtggagttccagaaccttcccaca
gtcaagctctccaaccgacgcttcgaggaccgctaccgcttcgatgtgtccaacgaacgt
tacctgaggaagctcttcacggaggaggtggtccgggatatcctgggttccccgcccgcc
gtcagtaccctggaaacagagtggcaccgtttgcaggaggacaggcggatcctacggcag
gtcttccccaagggcgacaccaaggtggtgctgccgtgcaacctggagcggatgatctgg
aacgtgcagaagatcttccacattaacaaacgcacacaaactgacttgtcgcccgtgagg
gtggtggaggccatccagacgatgctcagtaagtgcgtcattgtgtctggcaacgaccgc
atcagcaggcaggccaacgagaacgccaccttcctcttccagtgtctggtgaggtcaaca
ctctgcaccaagaaggtctcggaggaatacaagcttaccaccgaggccttcaactggctc
atcggtgagatcgaaacccgcttcaaccaggccatcgtaagtatttctattcaccagttt
gatttttgtgtatttcaaaagccattccaagtgatatattcaatattttacgtttaa
DBGET
integrated database retrieval system
