Panulirus ornatus (ornate spiny lobster): 139752028
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Entry
139752028 CDS
T10834
Symbol
Xpd
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03022
Basal transcription factors
porn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139752028 (Xpd)
09124 Replication and repair
03420 Nucleotide excision repair
139752028 (Xpd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
porn03021
]
139752028 (Xpd)
03036 Chromosome and associated proteins [BR:
porn03036
]
139752028 (Xpd)
03400 DNA repair and recombination proteins [BR:
porn03400
]
139752028 (Xpd)
Enzymes [BR:
porn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139752028 (Xpd)
Transcription machinery [BR:
porn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
139752028 (Xpd)
Chromosome and associated proteins [BR:
porn03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
139752028 (Xpd)
DNA repair and recombination proteins [BR:
porn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
139752028 (Xpd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
DEAD
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
139752028
NCBI-ProteinID:
XP_071523918
LinkDB
All DBs
Position
12:45366150..45579780
Genome browser
AA seq
758 aa
AA seq
DB search
MLLDVDGMRVYFPYDFIYPEQYSYMLDLKRSLDAKGHCLLEMPSGTGKTISLLSLTISYL
MANPQNLAKLIYCSRTIPEIEKVIEELRKLKIYIEKETGEPSNIIGVALASRKHLCINPE
VSKARDGKVIDSGCHALTASYVRSRAQRDDNIPQCDFFEKFDLHGKEFPIPSGCYNIDDL
REFGGQKGWCPYFLSRQAVLQANVVVYSYHYLLDPKISEIVSKEMKSEACVVFDEAHNID
NICVDSMSININRKILDKAKTCLTNLNEHIQRIKESDSNRLQEEYNRLIAGLRQAASQQD
VVANPVLPKDLIEENIPGNIRTADFFVSFMRRLLDYMKMRLTVTHAVQESPAGILKDLRN
RAFIDRKPLRFCSERLASIVRSLELTDVSELSPLIAVSHFATLVSTYMQGFVVIIEPFED
KAPNIPNPIMYLRCLDSSIAIKPVFTKFQTVVITSGTLSPLDMYPKILDFHPVVQNSFTM
TLARPCILPMIVTKGNDQVAISSKFECRDDPAVVRNYGKLLVEMARSVPDGMVCFFTSYL
YLENVVATWYDHGIICDLQRHKLVFIETQDDAETSLALVNYMKACDRGRGAVLLAVARGK
VSEGIDFDHHYGRCVIMMGIPFMYTQSRILKARLEYLRDQFNIRESDFLTFDAMRHAAQC
VGRVMRGKTDYGIMLFADKRFARADKRSKLPRWIQEYLADSKCDLSTEEAVQVTRPWLRQ
MAQPFTRDDQLGVSLLTLEQLNSAENIEKIQKRAQQSL
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgctgcttgatgtggatggcatgcgagtatattttccatatgacttcatctacccagag
caatattcttatatgttggaccttaagaggtcgcttgatgctaagggccattgtttattg
gagatgccatcagggactgggaagactatatcgctactttctttaacgatctcgtacctt
atggctaatccacagaaccttgccaagctcatttattgctcccgaacaatacctgaaatt
gaaaaagtaatagaggagcttcgaaagcttaagatctacattgagaaggaaactggagaa
ccatccaacatcattggagtggctttggcttctagaaaacatctttgtattaatcctgag
gtcagcaaagcaagggatgggaaggtgattgatagtggttgccatgcactcacagcatca
tatgtgcgctccagagctcagcgggatgacaacataccgcaatgtgacttttttgaaaaa
tttgatcttcatggtaaagaatttcctatcccatctggatgttacaacattgatgacctg
cgggaatttggagggcaaaaaggatggtgcccctattttttgtctcgacaagcagtatta
caagcaaatgtggttgtctacagttaccactacttgttggacccaaagatttcagagatt
gtatccaaggaaatgaagagtgaagcttgtgtagtctttgatgaagcacataatattgac
aacatttgtgtggattcaatgagtatcaacatcaacagaaaaatattggacaaagccaag
acatgtctcacaaaccttaatgaacacatacaaagaataaaggaatcagatagtaaccga
cttcaagaagaatataacagactgatagctggtcttcggcaggctgccagtcagcaagat
gtagtagctaatcctgtcctgccaaaagaccttattgaagaaaatataccgggaaatata
agaacagcagatttctttgtgtctttcatgcgccgtttacttgactacatgaaaatgcgc
ttgactgtcacacatgcagtccaggaatccccagcaggtatactgaaagatcttagaaac
cgggccttcattgatcgcaaacctttaaggttctgctcagaacgtctggcctcaattgtc
cgttccttagaattgacggatgtcagtgaactctctcctctaattgcagtctctcatttt
gctactctggtttctacatacatgcaaggttttgtagtgattatagaaccttttgaagat
aaggctccaaatattccaaacccaattatgtatttaagatgtcttgattcttctattgca
attaagccagttttcacaaagttccagacagtggtaatcacatctggtactctgtcacca
ttagacatgtacccaaaaattttagatttccatccagtcgtccagaattccttcaccatg
acattagctcggccatgcatcctcccaatgattgtgacaaagggcaatgatcaagtggct
atatcatcaaagtttgagtgtcgagatgatcctgctgtagttcggaattatggcaaactt
ttagtggaaatggcaaggagtgtacctgatggaatggtgtgcttctttacttcgtatttg
tacctggaaaatgttgtagctacttggtatgaccatggcatcatttgcgaccttcaaaga
cacaagttggtcttcattgaaacacaagatgatgcagaaacatcccttgcccttgtcaac
tacatgaaggcatgtgacagaggcagaggagccgttcttcttgctgtagcaagaggtaaa
gtgtcagaaggaatagattttgatcatcattatggacgatgtgtcatcatgatgggtatc
ccattcatgtacactcaaagccggattctcaaagccagactggagtatctacgtgaccag
ttcaatatccgagaaagtgacttcctaacctttgatgccatgcgtcatgccgcacagtgt
gttgggagagttatgcgagggaagacagattatggtattatgctgtttgcagacaaacgc
tttgctagagctgataagcgaagcaaattgcctagatggattcaagaatatttggcagac
agcaagtgtgacctttctacagaggaagctgtacaagtaacaagaccatggctaaggcag
atggctcagccatttaccagggatgatcagttaggggtatcgcttctcacccttgaacag
ctcaactcagcagaaaacattgagaaaatccaaaagagggctcagcagtcactctga
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integrated database retrieval system
