Panulirus ornatus (ornate spiny lobster): 139752749
Help
Entry
139752749 CDS
T10834
Symbol
Sym
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139752749 (Sym)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
porn03021
]
139752749 (Sym)
03019 Messenger RNA biogenesis [BR:
porn03019
]
139752749 (Sym)
Transcription machinery [BR:
porn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139752749 (Sym)
Messenger RNA biogenesis [BR:
porn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
139752749 (Sym)
U7-dependent histone pre-mRNA processing factors
139752749 (Sym)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
V-ATPase_H_C
Motif
Other DBs
NCBI-GeneID:
139752749
NCBI-ProteinID:
XP_071524729
LinkDB
All DBs
Position
13:11433498..11608583
Genome browser
AA seq
1078 aa
AA seq
DB search
MSETEQTTRDRVVELLNTAAFLPSEKEKIANLAQVQELIIHHDPQLLDSFFEEVAAFQND
RNSDVRKFVVGFIEEACKKDVAMLPRLVPNIHLLLADNAVAVVKRVIQAVAQLHRATLAW
LSSARTTSPEMEQVWQIINAMKNTIISMIDHDNDGVRTQAIKFLEALVLLQTYTESDSVT
RDGEFNLDQVPLTLKVARPRKLEEEARMVLNKLLAFQGSIHISSVNLMTCMSSLTIIARA
RPQFLGKIINALEILHANLPPTLTKSQVNSVRKHLKIQMLNLLKHPASYDYHENITTVLN
DLGITAAEVNKSMPSKDMIRKRVRRDKTGEEVTESVKKPRIDKEEKGKTEEVVEKNSAVD
ITQRWLVEKLTPETVATLVMFTMLNLPDEMPPLFSAGYSPITAAGTPTQIQHVARLLASQ
LTRAGVGPGVEQTKEEEVKSGYDSDEESKISRLVGGQVQLQEDTLQSGPVLVPAGVVGRT
MRHKVKTMKLGEVTKSLSTAANSKMQLLLLLRLLRCSKMMLFGSASQHRTRILTMLSGCI
SSQECEELEDFILEDMHNHADFLFSWLYSEYSTNHDFSQINRIFTTACKKETKKEMGYAE
ILSSVVMKVLTKDASKERDEFLSRLFLECPYVPEDLITSLVRVGSQGGDSILVIASILKD
TAQWRPLSAKPALRTLSLLATHDHESVRDQMTPILLELCEQENLREIVTEVATKYLKYLL
LETPPDSLCTHNLGRPTQPSEWTEPTVKACLYLYLALLPLNQSMIHDLAQVYVKTVNEAK
RSILRLLEGPIRHMGMDSPQLLKLVETCPKGGETLITRIIHILTEKAPPSEALVCRVREL
YNRRVSDVRFLIPVLTGLSKKEVIAVLPKLIKLNPHVVKEVFNRLWGVTLDTGASPLTPV
DLLVALHLIDSDKCDVKTVIKATGLCFAERSIYTAEVLAFVLQQLMEQPSLPTLFMRTVI
QTLTHYPKLLGFIMNILQRLISRQVWKQRKVWEGFIKCCQRAGTQSFTVLLQLPPTQLAD
VFTSASDLHTRLISHIATLTENQRAHIPSNLMEVIEGHNSSDQPQSTPSEPQPTPQET
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaactgagcaaaccacacgagacagggtggtggagctcttgaatacagctgct
ttcctaccatcagagaaggagaagattgcaaaccttgctcaagtacaggaactcattatt
catcatgacccacaactgcttgattcattctttgaggaagttgcagcttttcagaatgac
aggaactcagatgttcgcaagttcgtcgttggcttcattgaagaagcttgcaaaaaggat
gtggccatgttgccacggctagttcccaacatccatctcctccttgctgataatgcagta
gctgtagtgaaacgtgtaatccaggcagttgcgcagcttcaccgggccactctggcctgg
ctgtcctcagctcggaccaccagcccagaaatggaacaagtttggcagattatcaacgca
atgaaaaacacaatcatttctatgattgatcatgataatgatggagtgagaacacaagct
atcaagtttctagaggcattggtactactgcagacctacacagagtctgactctgtaaca
cgcgatggagagttcaacctggatcaagttcctttaacgcttaaagttgcacgacccaga
aaattagaggaagaagcaagaatggtgctgaacaagttgttagccttccaagggtctatt
cacatcagttcagtgaacttaatgacctgcatgtcctcccttactattattgcaagagca
cggccacagttccttggcaagattatcaatgccttagagattctccatgccaatcttcca
ccaacactaacgaagtcgcaagtgaacagtgtcaggaaacacttgaagatacagatgcta
aacttgttaaagcacccagcatcgtatgactatcatgaaaacatcaccacagtcctcaat
gatctgggaataactgcagctgaggttaacaaatcaatgccatctaaagatatgattcgg
aagagagtgagaagggataaaacaggtgaagaagtgactgaatctgtcaaaaaacctagg
atagataaggaggaaaaaggcaagactgaggaagttgttgagaagaactctgcagtggac
attactcaacgatggttggtggaaaagctaactccagaaacagtagccactttagtaatg
ttcactatgctgaatcttcctgatgagatgcctcctctgtttagtgcagggtacagcccc
atcacagcagctgggacaccaacacaaatccagcacgttgcgcgactattagcatctcag
ctgacacgtgcaggtgtaggccctggggtagagcagactaaggaagaagaggtgaagagt
ggatatgacagtgatgaagaaagcaagatttcacgtttggtgggtggacaagtgcagttg
caggaggatacattacagtcaggacctgtgcttgtccctgcgggagtagttggtcgaact
atgagacataaggtaaaaaccatgaagttaggggaggtcaccaaatcattgtcaacagca
gcaaatagcaaaatgcaattattacttcttttgcgactcctgcgatgtagtaagatgatg
ctgtttggcagtgcatcacagcaccgtacaaggatccttaccatgctttcaggatgtata
tcctctcaagaatgtgaagagttggaagactttattctagaagacatgcacaaccatgca
gatttccttttctcctggctctattcagaatattctacaaatcatgacttctcccaaatc
aacagaatattcaccacagcttgtaaaaaggaaactaagaaagaaatgggttatgcagaa
atcctcagcagtgttgtgatgaaagttttaaccaaggatgcaagcaaggagagggatgag
tttttatctcgattattcctggaatgcccatacgtgccagaagatttgataacttcatta
gtgcgagtgggaagtcaaggtggcgattccattcttgttatagccagcatacttaaagac
acagctcagtggcgtcctttgtcagctaagccagctcttagaaccctctctttactggca
actcatgatcatgaatctgtaagggaccaaatgacaccgatactgcttgagttgtgtgag
caagagaatcttcgtgagattgttactgaagttgctaccaaatatcttaagtacctgtta
cttgaaactccccctgactcgttatgcacacacaatctgggtaggcctacccagccaagt
gaatggacagaacctacagtgaaagcatgtttgtacctgtatcttgccctgctacctctc
aatcagtctatgattcatgacctggcacaggtatatgtgaagacagtcaatgaggctaag
cgttcgatactgaggttgttggagggcccaattcgacatatgggcatggattcaccccag
cttctgaaactagtggagacttgcccaaaaggtggcgagacacttattaccaggatcatc
catattctcactgaaaaagccccaccaagtgaagcccttgtatgccgagttcgtgaactg
tacaatcgccgtgtatctgatgttcggtttcttatccctgtattgacgggtcttagtaag
aaagaggttatagctgtccttcccaaactcattaagctgaacccacatgttgtgaaagag
gttttcaacagactatggggtgtgacactagatacaggggcatctccattaacccctgtt
gatttgttggtggcacttcaccttattgatagcgacaagtgtgatgttaagactgtaatt
aaagcaactggattatgttttgctgaacgaagcatctacacagctgaggtgctggccttt
gttctgcagcagttgatggaacaaccaagcttgcctacattatttatgagaactgtcatt
caaacactcacacattaccctaagttgctgggcttcataatgaacattttacaacgactg
atttcaagacaggtgtggaagcagcgaaaagtttgggaaggattcattaaatgttgtcaa
cgtgctggaacacagagttttacagtgttgctgcagcttcctccaacacagcttgcagat
gttttcaccagtgcctctgatctccatacaagactcatttctcatatagctactctcact
gaaaatcagagagcacacataccatccaacttgatggaagtaattgaaggccacaattca
tcagaccagccacaatctacccctagtgaacctcaaccaacccctcaggagacctga
DBGET
integrated database retrieval system
