Panulirus ornatus (ornate spiny lobster): 139753449
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Entry
139753449 CDS
T10834
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139753449 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porn03019
]
139753449 (Mtr4)
03041 Spliceosome [BR:
porn03041
]
139753449 (Mtr4)
03009 Ribosome biogenesis [BR:
porn03009
]
139753449 (Mtr4)
03016 Transfer RNA biogenesis [BR:
porn03016
]
139753449 (Mtr4)
Enzymes [BR:
porn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139753449 (Mtr4)
Messenger RNA biogenesis [BR:
porn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
139753449 (Mtr4)
Spliceosome [BR:
porn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139753449 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
139753449 (Mtr4)
Ribosome biogenesis [BR:
porn03009
]
Eukaryotic type
Pre-60S particles
Helicases
139753449 (Mtr4)
Transfer RNA biogenesis [BR:
porn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
139753449 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
DUF6987
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
139753449
NCBI-ProteinID:
XP_071526071
LinkDB
All DBs
Position
14:complement(53731922..53767947)
Genome browser
AA seq
1021 aa
AA seq
DB search
MACFEEDLFDFVEDDVDKQIETLPEIDAVDEDVDKRAVEELNQLLGKRAAEDDKKIKGAV
KKRRSQVEETQSELRLTEDLPRIAVHIIETMEACTHEVAVPPGATYIPLKPPKDKPAKTY
QFILDPFQKEAILCIDNDQSVLVSAHTSAGKTVVAEYAIAMCLQHKQRVIYTTPIKALSN
QKYRDFSDEFSDVGLLTGDVTINPNASCLIMTTEILRSMLYRGSEVTREVGWVVFDEIHY
MRDKERGYVWEETIILLPPTVHFVFLSATIPNASQFAQWICYLHHQPCHVVYTEYRPTPL
QHYIFPAGGEGIYLAVDETGKFREDNFNTAMTVLQNAPEQASLRGRKGGVKEGSDCYKLV
KMVMERNFAPVIIFSFSKKECEAYALQMSKLDFNLAEEKILVDEVFNNAIAVLSEEDRQL
PQVVSVLPLLRRGIGIHHGGLLPIIKETIEILFGEGLVKALFATETFAMGLNMPARTVLF
TTVRKFDGRDFRWLTSGEYIQMSGRAGRRGKDDKGIVIMMVDEKLNTSVVKNLVQGLADP
INSAFHLTYNMVLNLLRVEQINPEYILERSFFQFQNYSSIPLLCDRVSKCEKDLEKIVVP
RESEVESYYKIKQSIHNLMFERQAFITRPIYIMPFLQPGRLVYIKNNEDDFGWGVVLSYK
KQDDKKNPQEAPTITIDVILRVSEQTAACKITSDLKPPKPGEKSEPVVMSVMMKLIQEIS
AVRLKLPSDLKPLDQRIMVMKMVQEALRRVPENQFLLDPVKNMKIKDDVFLEVANKLEKF
KVRLETHKLHRDPEQEKLYELFSKKVEMKKELGNAELDLKRAKSLLQMDELKCRKRVLRR
LGYATSQDVIERKGRVACELSAADELLITEMLFNGLFNNLSAAQTCALLSTFVCDEKGSE
MPKLGEELSGPLRQMQDMARRIAHVSHECKLEIDEETYVEQFRPFLMDVVYEWCNGSSFM
ELCTKTDIYEGSIIRAMRRLEELLRQMIQASKAIGIDLENKFSEGVKLLKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggcatgttttgaagaagatctttttgatttcgtagaggacgatgtcgataagcagatt
gaaactttgccagaaatagatgcagttgatgaagatgttgataagagggctgtggaggaa
ctcaatcagttgttggggaaacgagctgcagaggatgacaagaagattaagggagcagtg
aagaagcgtcgttcacaagtggaggaaacacagtcagagctcagactgactgaagattta
ccaagaattgctgtccacatcatagaaactatggaggcatgtacacatgaagtagcagtc
ccccctggagcaacatatattccacttaagcccccaaaagacaaaccagcaaagacttat
cagtttatactggatccttttcagaaagaggccatattatgtattgataatgatcagtca
gtattagtgtctgctcacacatctgctggtaagacagttgttgctgaatatgcaatagcc
atgtgtttacagcacaagcagagagtaatttacactacacctatcaaagccctgagtaac
cagaaatacagagacttcagtgatgagtttagtgatgtgggtctgttaactggtgatgtt
accatcaacccaaatgcctcctgtcttatcatgaccacagaaattttacggtccatgtta
tatcgaggctctgaggtgacaagagaagttggttgggttgtttttgatgagattcattac
atgagagacaaggaacgaggatatgtgtgggaggagaccattatcctgcttcctcctaca
gtccactttgtttttctttctgcaactattcctaatgcaagccagtttgcccagtggatc
tgttaccttcaccaccagccctgccatgtagtgtacacagagtaccgaccaacaccacta
caacattatatcttcccggcaggaggtgaagggatctaccttgctgttgatgaaactgga
aagtttagagaagataattttaatacagcaatgactgttctgcagaatgcaccagaacaa
gcgagcttaagaggcaggaaaggaggagtgaaagaaggttcagattgctataagcttgtg
aagatggtcatggaacgcaactttgctccagtcatcatattcagtttctccaaaaaggaa
tgtgaagcgtatgctctccagatgtctaagcttgatttcaacttagcagaagaaaagatt
ttggtggatgaagttttcaacaatgcaatagcagtcctttcagaggaagatagacagctt
ccacaggtggtgtcagttttgcccttgctgagacgaggaataggcattcatcatggaggt
ttgctaccaataatcaaggaaacaatagaaatcttgtttggtgaaggtcttgtaaaggcc
ctctttgccacggagacctttgccatgggccttaatatgcctgccaggactgtcctcttt
acaactgttcgcaaatttgatggtcgtgactttcgttggcttacctcaggagaatatatc
caaatgtctggtcgtgctgggaggcgtggaaaggacgataagggtattgtgataatgatg
gtggatgaaaaactcaatacatctgtggtaaaaaatctggtgcagggccttgctgatccc
atcaactctgcttttcatctgacttacaatatggtactgaacttgctacgtgtggagcag
ataaaccccgagtatatcttagaacgatcattcttccagtttcaaaattactcgtccatc
ccattactttgtgatcgtgtgagcaagtgtgaaaaagacttggaaaaaatagttgtacct
cgagagagtgaagtagaaagttactacaagatcaagcagtctatacacaatctcatgttt
gaacggcaagctttcatcactcgacctatatatatcatgccatttctgcagccagggaga
ctggtctatattaagaataatgaagatgactttggatggggtgtggtactcagctataag
aaacaggacgataagaagaatcctcaggaggctccaacaataacaatagatgttatatta
cgggtctctgagcaaactgctgcttgtaagataacatcagatttaaaaccaccaaaacct
ggtgagaagagtgagccagtggtgatgtcagtgatgatgaagctgatccaggagatttca
gctgtcagacttaaattgcccagtgacctcaagccccttgaccagcgaattatggtaatg
aaaatggttcaggaagccttgaggagggttccagagaaccagttcttattggatccggtg
aagaatatgaaaataaaggatgatgtattcctggaggttgccaacaagcttgaaaagttt
aaggttcgattagagacgcacaaacttcatagagacccagaacaggaaaagttgtatgaa
ttattttctaagaaagtggagatgaaaaaggaactgggcaatgctgaattagatctaaag
agagctaaaagtcttctacagatggatgaactgaagtgtcgaaaacgtgttctccgtcgt
ttagggtatgccacctctcaagatgtaattgagcggaaaggtcgagtggcttgcgaactg
tctgcagcagatgaactcctcataactgagatgctcttcaatggtcttttcaacaatctt
tctgctgcccaaacatgtgccttgctcagcacatttgtttgtgatgaaaagggctcagaa
atgcccaaacttggtgaagaattatctggaccacttagacaaatgcaggacatggctcgc
cgaattgctcatgttagtcatgagtgtaagctagagattgatgaggagacttatgtggag
cagttcaggcccttcctgatggatgttgtgtatgagtggtgtaatggttcctcattcatg
gagctgtgcacaaaaactgatatatatgaaggaagcattattcgtgcaatgcgccgtttg
gaggaattgttgcggcagatgattcaagcttccaaagcaattggtattgacctggaaaac
aaattctctgaaggtgtcaaactgttgaagagagatattgtatttgcagcaagtctttat
ttataa
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