Panulirus ornatus (ornate spiny lobster): 139753755
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Entry
139753755 CDS
T10834
Symbol
Cpsf100
Name
(RefSeq) probable cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139753755 (Cpsf100)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porn03019
]
139753755 (Cpsf100)
Messenger RNA biogenesis [BR:
porn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139753755 (Cpsf100)
U7-dependent histone pre-mRNA processing factors
139753755 (Cpsf100)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Methyltransf_4
Motif
Other DBs
NCBI-GeneID:
139753755
NCBI-ProteinID:
XP_071526674
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Position
15:23779795..23946734
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AA seq
702 aa
AA seq
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MEVRLYSKFIFISYRIFPRVDCVLISYPDPLHMGALPYLVGKCQLSCPVYATVPVFKMGQ
MFMYDWFQSHHNYDLVEHFTLDDVDAAFELITQVKYNQSIPMRGKGIGLNISAQPAGHMI
GGAIWRILKDGEGDIVYAVDFNHKKERHLGGCELDKIARPSLLITDAFNASYRQERRRHR
DEKLVAQLQETCRNGGNVLVATDTGGRVLEMTHMLEQMWSTRESGLSAYSLCILSNTGYH
VIHFAKQMIEWMSEKLTKAFDSLRTNPFSFKHLKFCHNLTDLSRLPSPKVVLASFPDLES
GYSRELFVQWATNPKNTIILTSRTGPDTLARRLIDNPLIRTFKLLEKRRMKLEGPELDEH
YRQKREEEQQQQRIKKEEVETSSDSEDDEGLEAGKHDIIVLHEKAGTQSMFRSRKHHPMF
PFHEEKVRGDDYGEFINLDDFDVGSTKEENKENIDLQIPYEEEDIMDMEEAPTKCVSQTV
TVRVAAQVHFIDFEGRSDGESIRKIVEAMHPLRVILVRGSQTDLQAFAENIRSMTRAKVF
TPTLGQVVNASMESHIYQIKLAESLVSSLMLQPAGRDMEVAWVDGCVSFPSENIDKTGEE
GDRQVISSENERDKDMATLNLIPREQAPPHCPVFINDIRLSEFKQVLSRAGISSEFNAGI
LWCANGTIALKKQDSGSISMEGPLSTDYYEIRELLYSQYAIL
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgagattgtattcaaaattcatctttatatcatacaggatctttccacgtgtc
gactgtgttttgatatcatatccagatcctctacatatgggtgctttgccatacttggtt
ggtaaatgccagttgtcttgcccagtgtatgctactgttccagttttcaagatgggacag
atgttcatgtatgattggtttcagagtcaccataattatgacctggtggaacacttcact
ttagatgatgtggatgctgcctttgagctcatcacacaagtcaagtacaaccagagtatc
cccatgagaggaaaaggaattggcctgaatatatctgcccaaccagcaggccatatgatt
ggaggagctatatggaggattctcaaagatggggaaggggatattgtttatgctgtcgat
ttcaatcacaagaaagaacgtcacttaggaggttgcgagttggacaagattgctcgccca
tctcttcttattactgatgccttcaatgcctcatatagacaggaacgtcgacgccacaga
gatgagaaacttgttgcccagctgcaagaaacatgtcggaatggaggaaatgttctggtt
gctactgacacgggtggacgagtgttagagatgacacacatgctagaacagatgtggagt
acacgagagagtggactgtctgcgtattctctttgtatcctgtccaacacaggctaccat
gtcatacattttgcaaaacagatgattgaatggatgagtgagaaattaaccaaagccttt
gactctctccgtacaaaccccttcagcttcaagcacctcaaattctgtcataatcttacc
gatcttagtcgtcttccttcccctaaggttgtattggcaagttttccggatttggaaagt
ggatattcaagagagctgtttgtccagtgggccaccaacccgaagaacaccattatcctg
acatcccggactggaccagacacattggcaagacgactcatagacaatccactgattcgg
acatttaaactcttagaaaaaagaagaatgaagttggaaggacctgagttggatgaacac
taccgtcagaaacgagaggaagagcagcaacaacaaagaatcaagaaggaagaggtagag
acatctagtgacagtgaagatgatgaagggctggaggccggcaagcatgacatcatcgta
ttgcatgagaaagctggaacacagagtatgtttaggagtcggaaacatcatcccatgttt
cctttccatgaagaaaaggtccgtggagatgactatggtgaatttattaatctagatgac
tttgatgttggatctacaaaagaggaaaacaaagagaatatagatctacaaattccttat
gaagaagaagacattatggatatggaagaggcaccaactaaatgtgtatcacagacagtg
acagtaagagttgcagcccaggtgcacttcattgactttgagggtcgcagtgatggtgaa
agtatacgcaagattgtggaggcaatgcaccctcttcgagtgatcctggtgagaggctct
cagacagacttacaagcttttgctgaaaacatccgcagtatgacacgagccaaagtgttc
actccaactcttggacaagtggtgaatgcctctatggagtcccatatttaccagatcaag
cttgcagagtcattggtgtcatcactgatgttgcaacctgcaggccgtgacatggaagtg
gcctgggttgatggctgtgtttcttttccttcagaaaacattgataaaacgggtgaggag
ggtgacaggcaagttatctcaagtgaaaatgagcgtgataaggatatggcaacgcttaat
ttgattccaagagaacaggcacctccacactgtcctgtctttatcaatgacattcgcctg
agtgaatttaaacaagttcttagccgagcaggaattagttcagaattcaacgctggcatt
ttgtggtgtgctaatggcactatagctctcaagaaacaagactcaggcagtatatccatg
gaaggtcctttgagtactgattactatgaaattcgtgagcttctctactctcagtatgca
atactatag
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