Panulirus ornatus (ornate spiny lobster): 139755439
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Entry
139755439 CDS
T10834
Symbol
Dcr-2
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
porn03036
]
139755439 (Dcr-2)
Chromosome and associated proteins [BR:
porn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
139755439 (Dcr-2)
microRNA pathway
RISC loading complex
139755439 (Dcr-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
ResIII
Helicase_C
PAZ
DEAD
Dicer_dsRBD
Dicer_platform
dsrm
Dicer_PBD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
139755439
NCBI-ProteinID:
XP_071529845
LinkDB
All DBs
Position
19:complement(21567943..21741340)
Genome browser
AA seq
1524 aa
AA seq
DB search
MVDVQEASAHIINAVDEAENQEDHADFKPRAYQLELFECAKKQNSILVLGTGSGKTFISI
LLIKEHAHEIRGSISSGSKRTVFIVNTVPLVHQQALAIQTHTALNVGKYEGSMGVDFWTD
EKWEEELDKNEVLVLVAQIFHDLVIHARLKLSSINLLIMDECHHATGCHPMREIMRQYES
LKKSSLEKCPKVLGLTACVIQRKCKKKDVMDSMKKLEVAMDCALETAKDQDEVVRYSTGP
KESIICYGFDEETDYQEVIKAQLLGLLNDVNEFECIQGRYKKVVKKKIENIKHIMTALGD
WSVARAVKYEMDHFAEAIDFEDVPAVQEFLQLLQFRFESIHEFCVAEESKMDSPEGHVTK
KVERLFEILRACHRREVYGLIFVERRCTAKILYDLLLEVAAGDHGLSFIKPTYIIGSTTR
LGTDIRLAELELRKQKETLEKFRKGECNIIVSTSVLEEGLDVRKCNVVIRFDKPVNYRAY
VQSKGRARAHPSRYLLMVPETDLLEMKETVDVYKEIGKSLMSLCHNRSQPSLSEMSQHYE
QDVHVAPYEPYGSDGPKVTINSAISLINIYCGKLPHDKFTELLPEVVSTINEEDKVMVGI
RLPINSCLKEMVHGDWMENKELAKKSAAMCVCKKLHEIGELNERLRPTEFVDDGILEDLI
EIPIEEASKDGAHEPGTKKRCQIYEKEVCEAFTHFQEGGYYLYSISMRPNKELLSSVVID
SSECDTTVGFICKQKLKHCPFPLYFSKWGELEVSIKCINELIDPTPEQICKIQHFHRLVF
ENLLSINSSLFEFSPGDSGVYIVPIGKTGNAQTIHEDILNQIAPLKSLRCSVENRLPNDK
AYQFNRPAFEDAIVYPLYDSQSDAMYYISEILDNVNPRAEFPDLKDEFSSYEEYFFRKYG
MRISNREQPLVVVKHLPKDLKYLKKIECSGQKTKKKRKHLAMFIPELCGIMPLKASLWWQ
IMCVPSILCRLNGLNLAMQLNTDLEITKCSSEDSENLAVSNTWTEEITKRMLESHKKNLS
VLLVKKKKEYIHPFMLLNALTLRGANDCVDLERLEVLGDSFLKYITAERLFLKDSRKHEG
QLSSCRSKLVSNRTLYSLAKKRKIPEKIQSINLCPQTNGFLPGFIIKHQVDLKLRNLNLP
HHLWPLLPDFGHLDNLEKEVEMIWNKNTTAGAGSKKGGTCYNPWMEHELSDKSIADSVEA
LIGAYLLVCGSETAINFLSELGVCFFRDESLRKSLFEIPSPQLNNEEWAKTELLNLYYRA
CLDRLEEKIHYEFRDKGYIVQAVTHTSFCQNKVTDCYQRLEFLGDAVLDFLVTGHVFFHH
ATYTPGQISDLRSYYVKNETLAEVAAKKELHKHLLYFAPKLQTSIDKFLNIMVDEQEERD
LSTEDDEVNSEDVDVPKVLGDLVEAIIGAVYLDSERSIEKAWEVIEVLMGDLLKKPVSSI
PVNCVRELYEMLPEGVQFEKVPRIESDDFAQYKVQIDGLPALYGKGKNYRTAKKAAAKKG
IEKINEVIAQKIAQGFGESCPPQD
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atggttgatgtgcaggaagccagtgcacatataatcaatgcagttgatgaagctgaaaat
caagaagatcatgctgactttaagcccagagcataccagttggagttgtttgagtgcgct
aagaagcagaattccattcttgttcttggcacaggatcaggaaagacattcatatctatt
cttctcattaaggaacatgctcatgagatccgtggatcgatatcaagtggcagtaagcgt
acagtatttattgtgaacactgttccattagtacatcagcaggctcttgctatacaaaca
cacactgcactaaatgtgggcaaatatgaaggttcaatgggggtggatttttggacagat
gagaagtgggaggaagaactggataagaatgaggtattggttttggttgcacagatattc
catgatcttgttattcatgcaaggttaaaattgtcatcaatcaacctcctcattatggat
gagtgtcatcatgcaacaggttgtcaccctatgcgggagatcatgagacagtatgaatct
ttaaagaaatcttcccttgagaagtgtccaaaagtattagggcttacagcctgcgtcatc
caacgtaaatgcaaaaagaaagatgtcatggatagcatgaaaaaattggaagtagctatg
gattgtgctttagagactgctaaagatcaagatgaagttgtcagatatagcactggacca
aaggaaagcattatttgctatggctttgatgaagagacagattatcaagaagttataaag
gcccagttacttggactcttgaatgatgtaaatgaatttgaatgtattcaaggaagatat
aaaaaagttgtgaagaagaaaattgaaaacattaagcacatcatgacagctcttggagat
tggagtgtagctcgtgctgtcaagtatgaaatggatcactttgctgaagctatagatttt
gaggatgtgccagcagtacaggaatttctgcaattattgcagtttaggtttgaaagcatt
catgagttttgcgtggctgaggagtcaaagatggacagtcccgaaggccatgttactaaa
aaggttgagagattatttgaaatacttagggcatgtcataggagagaagtatatggattg
atctttgttgaaaggagatgcactgctaagattctgtatgaccttcttttagaggttgct
gctggagatcatggcctttcttttataaagcccacatatattattggtagtactacccgt
cttggtactgatattcgtttagctgaactagaacttcgaaagcaaaaggaaactttagaa
aaatttcgcaaaggtgaatgtaacataatagtttcaactagtgtcttagaagaaggattg
gatgttagaaagtgcaatgtagttatccgttttgacaaaccagtgaattatcgtgcatat
gtgcaatcaaaaggaagagcacgagcacatccttcaagatatcttctcatggtgccagag
acagatttgctagaaatgaaagaaacagttgatgtatataaggaaattggaaagtcttta
atgagtctttgtcataaccgttcacagccttctctttcagaaatgtcccagcactatgaa
caggatgtacatgttgctccttatgagccttatggatctgatggcccaaaagtcaccatc
aattctgccatatcacttatcaacatttattgtgggaaattacctcatgataaatttaca
gagctgttacctgaagttgttagcacaatcaatgaagaagataaagtgatggttggtatc
cggttacctatcaattcatgcttgaaagaaatggtgcatggtgactggatggagaacaaa
gaacttgctaagaagagtgctgcaatgtgtgtatgtaagaagctgcatgagataggagaa
ctaaatgaacgtttacgaccaactgaatttgtagatgatggcatcttggaagatttaata
gaaattccaattgaggaagcttcaaaggatggggcacatgaacctggtacaaagaaacgc
tgtcaaatatatgagaaagaagtgtgtgaagccttcacccacttccaggaaggaggttat
tacctctattcaattagcatgcgaccgaacaaagagcttcttagtagtgtggttattgac
tcctctgagtgtgacacaacagtaggatttatatgtaaacaaaagttgaagcattgtcca
tttccactatacttctctaaatggggagaattggaggttagtataaaatgtataaatgaa
ctcatagaccctacacctgagcaaatatgtaaaattcaacactttcacaggttggtcttt
gaaaatttattatcaatcaatagttctctatttgaatttagtccaggtgattcaggtgtc
tatattgtaccaataggaaaaacaggaaatgcacaaaccattcacgaagatattctaaac
cagattgctccattgaaatctctgaggtgttctgtggaaaatagattacctaatgataag
gcttaccagttcaataggcctgcttttgaggatgccatagtctacccattatatgattcc
cagtcagatgctatgtattatatttctgaaattttagataacgtaaatccacgagcagaa
tttcctgacttaaaggatgaattttcttcctatgaagaatatttctttagaaaatatggt
atgaggatctccaacagagagcagcctttggtagttgttaaacatttgccaaaggatttg
aaatatttgaaaaaaattgaatgttctggtcaaaagacaaagaaaaagaggaagcattta
gccatgttcatccctgaactgtgtggcataatgcccttaaaagcttctctctggtggcag
atcatgtgtgtcccttccattctttgtcgcttgaatggtttgaatttagctatgcaattg
aatactgatctggaaattacaaaatgttcatcagaagattcagaaaatttggcagtcagt
aacacatggacagaagaaattactaaaagaatgttggaatctcacaaaaaaaatttgtct
gttcttcttgtaaaaaagaagaaagaatatatccatccatttatgttacttaatgctctc
acacttcgtggggcaaatgattgtgttgatctggaaaggttggaagttcttggagattca
ttcttgaagtatattacagcagaaaggttatttttaaaggattcaagaaaacatgaggga
caactctcatcgtgtcgtagtaaattagtgtctaacagaactttgtattctttggcaaag
aagaggaagatacctgaaaaaattcagtcaattaatctgtgtcctcaaactaatggcttt
ctgccaggctttatcatcaaacatcaagtggatcttaaactgagaaatcttaatcttccc
catcacttgtggcctcttctccctgattttggtcatcttgataaccttgagaaggaagtt
gaaatgatatggaacaagaatacaacggctggagcaggcagtaagaaaggaggaacatgt
tacaatccctggatggagcatgaactgtcagacaaaagcatagctgattctgttgaagca
ttgattggtgcctacttgcttgtttgtggtagtgagacagccattaacttcctttctgag
ttgggtgtgtgtttcttcagagatgagtctttaaggaagtctctctttgaaataccttcg
ccacagctaaataatgaagagtgggcaaagactgagctcttgaatttatactaccgagca
tgcctggaccgtttggaagaaaagatacactatgagtttcgagacaaaggttatattgta
caggctgtaacacacacttccttttgtcagaataaggtaactgactgctaccaaagactg
gaattcttgggagatgcagtgttggactttctagtgacagggcatgtgttctttcatcat
gccacatataccccaggacagatttcagacctaagatcatattatgtgaaaaatgaaact
ttggctgaagttgctgcaaagaaggagcttcataaacatttgctctactttgctccaaaa
cttcagacctctatcgataaattcttgaacattatggttgatgaacaggaagagagagat
ctgagtacagaggatgatgaagtaaacagtgaggatgtggatgttcctaaagtactaggt
gatttggttgaggccatcattggagcagtgtatttagatagtgagaggtccatagagaaa
gcatgggaagtgatagaagtgctcatgggagacctgttgaagaaaccagtgtcaagcatc
ccagttaattgtgttcgggagttgtatgaaatgctgccagagggtgtacagtttgaaaag
gtcccacgtattgaaagtgatgactttgctcagtataaagtgcagatagatggcttacca
gcactgtatggtaaggggaagaattacagaacggcaaagaaagcagcagcaaaaaagggc
attgaaaaaatcaatgaagttatagctcaaaagatagctcaggggtttggagaatcctgt
cctccacaagactga
DBGET
integrated database retrieval system
