Panulirus ornatus (ornate spiny lobster): 139755890
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Entry
139755890 CDS
T10834
Symbol
CstF50
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139755890 (CstF50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porn03019
]
139755890 (CstF50)
Messenger RNA biogenesis [BR:
porn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
139755890 (CstF50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
CSTF1_dimer
EIF3I
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SCAP
Ge1_WD40
WDR90_beta-prop_4th
Beta-prop_NWD2_C
Beta-prop_NUP159_NUP214
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_2nd
Beta-prop_IP5PC_F
Beta-prop_HPS5
Beta-prop_VPS8
MIOS_WD40
Cytochrom_D1
Mcl1_mid
Motif
Other DBs
NCBI-GeneID:
139755890
NCBI-ProteinID:
XP_071530701
LinkDB
All DBs
Position
20:6684237..6707810
Genome browser
AA seq
430 aa
AA seq
DB search
MKEEEKKEEKQKVKQRELMYKLIISQLFYDGHQKYAQELATVVDQEATAVSPSDRLMNVL
TIGLQHEHEVERPLNRLEYTLGPGLDLEYETEPQTSAPEPAMYETAYVTSHKDKCRAAAF
SLDGNLVATGSVDASIKILDVDRMLAKSDPDAVELHPDAVVGHPVIRTLYDHLDEITCLE
FHPREQVLISGSRDTNIKMFDFSKTSAKKAFKTLTDAEQVTSMSIHPSGDFLAVSTEGHV
VRFYDINTCQCYVCPYPREHHTGALTSVRYSADARVCTTASKDGDVKVWDGVSGRCVQTF
SKCHDGAEVCSVLFSRNGKYILSSGLDSIVKLWELSTGRCLIAYTGAGSVGRQEHSAHAM
FNHTEDFVMFPDEATTSLCAWDARNAQRKNLLSLGHNGPVRHMVHSPCSPAFITCSDDFR
ARFWYRRNVH
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggaagaaaagaaggaagagaagcagaaagtaaagcaaagggagttgatgtac
aaactcataattagtcagttgttttatgatggtcaccagaaatatgctcaggagctggct
actgtagtggaccaggaagctactgctgtctctccctcagatagactcatgaatgtattg
accattggactccaacatgaacatgaagtagagaggcccctcaatcgtctagaatacacc
cttggtcctggcctggatcttgaatatgaaacagagccccaaactagtgctcctgaacct
gcaatgtatgagacagcctatgttacctcacacaaagacaagtgtcgagctgcagctttc
tcactggatggtaatcttgtggcaactggaagtgttgatgcatcgattaagattctggat
gtggaccgcatgttggctaaaagtgaccctgatgcagtagagctacacccagatgctgtt
gtaggtcatccagtcatacgcactctgtatgaccatctagatgagattacctgtctggag
ttccatccaagggagcaagttctcatctctggaagtcgagacactaacattaagatgttt
gattttagtaaaacttctgctaaaaaagccttcaaaactctgacagatgctgaacaagtg
accagtatgtcaatacatcctagtggagatttcctggcagtgtcaaccgaaggacatgtt
gtaaggttctatgacatcaatacttgccaatgttacgtatgcccataccctcgtgagcat
cacactggagcacttacgtctgtgcggtattcagcagatgcccgagtctgtacaacagct
tctaaagatggagatgtgaaagtatgggatggggtatcaggacgctgtgttcaaacattt
tccaaatgccatgatggtgctgaagtctgctctgttctcttctcacgtaatggaaagtac
atcctgtcttcgggcttagacagcattgtgaagctgtgggagctctcaactggacgctgt
cttattgcttacactggtgctggttcagttggtcgtcaagagcacagtgcccatgcaatg
ttcaaccacacagaagattttgtgatgtttcctgatgaagcaactacttctttgtgtgct
tgggatgctcgtaatgctcagcggaaaaatttactttccttgggtcacaatggtccagtg
agacacatggtccattctccttgttcccctgcattcatcacatgttctgatgactttcga
gctcggttttggtacaggagaaatgttcattga
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