Panulirus ornatus (ornate spiny lobster): 139756295
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Entry
139756295 CDS
T10834
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139756295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porn03019
]
139756295
Enzymes [BR:
porn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
139756295
Messenger RNA biogenesis [BR:
porn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
139756295
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
ORF_2_N
Motif
Other DBs
NCBI-GeneID:
139756295
NCBI-ProteinID:
XP_071531662
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All DBs
Position
21:5175801..5211229
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AA seq
564 aa
AA seq
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MVDVTNDNFDHLLPQILADLKSASYVAVDTEFTGLLADNVFKGSLFDDGSQRYQKLCSNI
RKFTICQLGLAAFKGVPNVNAYSVRSYNFYLCPQSCLSFDSTFMCQTSSIEFLKRFNFDF
NKWLYDGLSFMNAHETEELRRELLLLVKGNKAVNLPYEVQEHLSNIGEWTVTANEGDTTT
ASVCSINSQVLLKTSIHNRFQDLWAREDNRQVVIQKVSALERTRLQAEDPEGIEYVETNV
RKMLGFTTIFHYLTELQKPLVLHNSLLDLMLIYKQFHQNLPESYEVFKSDLHKLFPIIYD
TKFIATELKHHFRDKDEKVSNMFSNTGLVDLASTLRRSLPVMYRPLLSHDPPGNKYDGDD
VLAHEAGFDAYLTGLSFLSMAHLYAMLQMPSITQHRPMSPREHVYALKKFANCVQIQRAA
VRYVNLIGQDPKSKQPPWLLIEGQHKSVRVSPGMVATELAQYGHLDIKPHNNNSVLVAAT
SWKCINDILMNLEGNSHMKVKVYRRLRHSTLIRTLSCVDVLDPYLLQHGFKRKQVHSKVQ
APNMQNRLTAVQQQRNLRYPKNRD
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggtagatgttaccaatgataactttgaccaccttctcccacaaatattagctgactta
aagtcagcttcatatgttgcagtggacaccgaatttacaggacttttggcggataatgtg
tttaagggcagtttatttgatgatgggtcgcagagataccagaagttatgttccaacatt
cgcaagttcacaatatgtcagcttggtcttgcagcctttaagggtgttccaaatgtcaac
gcatactctgtaagaagctacaacttttatctctgccctcaatcatgtttatcctttgat
tccacatttatgtgccagacttcaagcatagagtttctcaagagattcaactttgatttc
aataagtggttgtatgatggtctttcattcatgaatgcacatgaaactgaagaacttcgc
agggagttattgttgcttgtgaaaggaaataaagctgtaaatcttccttatgaagtacaa
gaacatttaagcaacataggggagtggacagtcacagcaaacgaaggggacacaactact
gcttctgtttgcagtattaactcccaagtgttgctcaaaaccagtatacacaacaggttc
caggatctctgggccagagaggataatagacaggttgtcatccaaaaagtatcagcttta
gaacgtacaagacttcaggcagaagatcctgaggggatagaatatgtggaaaccaatgtg
agaaaaatgttgggatttacaactattttccactatctaacagaactccagaagcccctt
gtacttcacaattctctattagatctcatgctgatatataaacagtttcatcaaaacctg
ccagagtcatatgaagtgttcaagtctgacctgcacaagttattccccatcatatatgac
acgaaattcattgccacagaacttaagcaccatttcagagacaaggatgagaaagttagc
aatatgtttagtaacacggggttggttgatttagcttcaactttgaggagaagtttgcct
gtaatgtaccgtccattactgtcccatgatcctcctggaaataagtatgatggagatgat
gtgctggctcatgaagcaggttttgatgcgtacctcacaggactctcattccttagtatg
gctcatctttatgccatgctccaaatgccctcgataacccagcaccgcccaatgagtcct
cgagaacatgtgtatgctctcaagaaatttgcaaattgtgtgcagatacagagggcagca
gttcgttatgtgaatctgataggccaagatccaaaatccaaacaacctccttggctttta
attgaagggcaacacaaatcagtgagagtctcacctggcatggtggcaacagagctggca
cagtatggacaccttgatattaaacctcacaacaacaactctgttttagttgctgctact
tcttggaaatgtataaatgacatcttgatgaatttagaaggaaacagccatatgaaagtc
aaggtgtaccgaaggctgaggcattctactcttataaggaccttatcctgtgtagatgtg
ctagacccttatttacttcagcatggattcaagaggaaacaagttcacagcaaagttcaa
gctccaaatatgcagaacagactaacagctgtgcagcagcaaaggaatttaaggtatccg
aaaaatagagactga
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