Panulirus ornatus (ornate spiny lobster): 139757826
Help
Entry
139757826 CDS
T10834
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139757826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porn03019
]
139757826
Enzymes [BR:
porn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
139757826
Messenger RNA biogenesis [BR:
porn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
139757826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
139757826
NCBI-ProteinID:
XP_071534813
LinkDB
All DBs
Position
28:complement(8937681..8980155)
Genome browser
AA seq
573 aa
AA seq
DB search
MEVTKENFEEVLPKVADLIKKADFVAVDAEFTGLSFGDTTRYCELDTAEERYAKVREAAK
SFGMIQFGITTFRYIRENSAYRHATFCFYLLGKTGEILYYDNSSLRFLADNGFNFNKLFK
SGLSYLSLMEEAETRAKYSVKSLEPLTPSPLKVAEESAKKFLNETEAKMKVFMMDKSQDV
LVIPGTTISGFFRKLLYNNIVAKYQNILIRSITTNSERNIEIRKFDSAESRTKFLEDERE
QKLDKQIGFTHVIRKILESNKPIVGHNCVLDLLHVIDKMVQPLPEQWEELKTVVKSNIPT
VYDTKLIAKDPPFCVDIPNTSLGALHSVLCGKYCPPIFIVEDGCESYSIRESSKAHDAGY
DAFMTGVCFVTMVKRLDGIHWKEKSAVKSKHLVLYANRLNNMNSHDIPFLNLVGPDVEVK
RSQIFCVECPSTTTPVQIHELFQMIRPVKLVWVNNTFVYVIPLEGIDSRKCKQHLKGIQA
SCPPLIRVRMYGDTSSSKRKSLSDDAAPHQERGASHAHEYKRLKSVGSDQLSQMTLESPS
AEDPPPICDGDNGKKVDTQDSLFDGVFSIPDEW
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggaggttacaaaggaaaactttgaagaggtactaccaaaggtagctgatctgattaag
aaggcagactttgttgcagttgatgcagaatttacaggcttatcttttggtgataccaca
agatattgtgagctggacactgcagaagaaagatatgccaaagtcagagaagctgcaaag
tcttttggaatgattcaatttggaataacaacctttagatacattagagaaaattcagca
tatcgtcatgcaacattctgcttctacctacttggaaaaacaggagagattttatactac
gacaatagcagtcttagattcttagctgataatggatttaatttcaacaaattatttaaa
agtggactttcatacctttctttgatggaagaagcagagacaagagcaaaatatagtgtc
aagtcactagaaccattgacgccatctcctttaaaggtagcagaggagagtgcaaaaaaa
tttttgaacgagactgaagcaaaaatgaaagtgttcatgatggacaagtctcaagatgtt
cttgtgattcctggcactaccatttcaggtttttttcgcaagctcttgtacaacaatatt
gtagccaagtaccaaaatattctcattcgtagtataaccacaaacagtgaaagaaatatt
gagatacgcaagtttgattctgctgagtcccgaactaaatttctagaagacgagagagaa
cagaaattagataaacagattggctttacacatgtcatacgaaagattctggaaagcaat
aagccaatagttggtcataattgtgtgttagatttgttgcatgtgattgacaagatggtt
cagcctctaccagaacaatgggaagagttgaagaccgttgtcaagtccaacattcctact
gtttatgatacgaaactcatagcaaaggatcctcccttctgtgtagacattccaaataca
tctttaggagcactgcatagtgttttgtgtggcaaatactgtcctccaatatttattgtt
gaagatggatgtgaaagctacagtattagggagagcagtaaagctcatgacgccggctat
gatgcatttatgacaggcgtctgttttgtgacaatggtcaaaagacttgatggtatccat
tggaaggagaagtctgcagtgaagtcaaaacatcttgtcttatatgccaacaggttgaac
aacatgaactcccatgatattccattcctgaacttggtgggccctgatgttgaggtaaag
agaagccaaattttttgtgtagaatgtccctccactacgacccctgtgcagatccatgaa
ctttttcaaatgatacggccagtcaagcttgtatgggtgaacaacacttttgtctatgtc
attcctttggaggggatagatagcaggaaatgcaagcaacatctgaaaggtattcaagcc
tcatgtccaccattgatccgtgtaagaatgtatggagacacatcaagctcaaagagaaaa
tctctttctgatgatgcagcccctcatcaagagaggggtgcaagccatgcacacgagtac
aaaagactgaaaagtgttggatctgatcaactctcacagatgaccctagagtctcccagt
gctgaggatcctcctcctatatgtgatggagataatgggaaaaaagtggacacacaagat
tcgctttttgatggtgtgttttctatacctgatgagtggtag
DBGET
integrated database retrieval system
