Panulirus ornatus (ornate spiny lobster): 139758443
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Entry
139758443 CDS
T10834
Symbol
slx1
Name
(RefSeq) structure-specific endonuclease subunit slx1 isoform X1
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
139758443 (slx1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
porn03400
]
139758443 (slx1)
DNA repair and recombination proteins [BR:
porn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
139758443 (slx1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SLX1_C
GIY-YIG
PHD_NSD
zf-HC5HC2H_2
zf-HC5HC2H
T5orf172
PHDvar_NSD
DUF6062
zf-RING_2
zf-RING-like
PHD
Motif
Other DBs
NCBI-GeneID:
139758443
NCBI-ProteinID:
XP_071535968
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Position
30:complement(19750575..19786592)
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AA seq
285 aa
AA seq
DB search
MFLGIREIPALLRDFIEHFRMAEGAEVVEDFYGVYLLYCINPQYKGSTYIGFTVDPNRRI
KQHNRGVKSGGAYRTSYRGPWEMVLIIHGFPNDISALRFEWAWQHPGRSRRLRDLGRKKP
REQKYDFCLRVVAHMLRTKPWSRLPLTVRWLKQQYMKDFPAGMEPPVHMPISYGPVKPAK
VMKPVENKDIKNQDQMCVICERIAKQTDIMRCLSVSCPLISHVRCLADHILQEESSGMIL
PLEGSCPSCGITLLWGDLVRLKRGCYQQSGKDDNDHWAESLSQVT
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgttccttgggattcgagagattcctgcattgctcagagattttatagagcactttaga
atggctgaaggagcagaggttgtagaggacttttatggtgtctacttgttgtactgcatt
aatccacagtataaaggctccacatacattggatttactgtagaccccaaccgacgcatc
aagcaacataaccgaggagtgaaatcgggtggagcatataggaccagctataggggccca
tgggaaatggtgctgattatccatggatttcccaatgatatttctgcactgcgatttgaa
tgggcatggcagcacccaggaagaagccgtcgcttacgagatctggggcgtaaaaagcca
agagaacaaaaatatgacttttgtctgagagttgtagcccacatgttgcgtacaaaacca
tggtcccgtcttcctcttactgtgagatggttaaaacagcagtatatgaaggactttcct
gctggaatggaaccaccagtccatatgcctatatcgtatgggcctgtaaaacctgccaaa
gtgatgaaaccagtagagaacaaagatattaagaaccaggatcagatgtgtgtcatttgt
gaaaggattgcaaaacaaactgatataatgagatgtttgtctgtgtcatgtccactgatt
tcccatgtcagatgccttgcagaccacattttacaagaagagtcgtctgggatgattttg
cccttagaaggatcatgtccaagttgtggtatcacattactatggggagacctggtgagg
ttgaaacgtggttgttatcagcagtctggaaaggatgataatgatcattgggctgaatcc
ctctcacaagttacttga
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