Panulirus ornatus (ornate spiny lobster): 139758462
Help
Entry
139758462 CDS
T10834
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139758462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
porn03041
]
139758462
Enzymes [BR:
porn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139758462
Spliceosome [BR:
porn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139758462
Complex C
U5 SnRNP specific factors
139758462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-C2H2_14
AAA_19
Motif
Other DBs
NCBI-GeneID:
139758462
NCBI-ProteinID:
XP_071536010
LinkDB
All DBs
Position
2:93533925..93570682
Genome browser
AA seq
799 aa
AA seq
DB search
MDEDTGLRSHRRERKERKEKERRDRERERGDRDRDRGEREKDREHYREREKERNSERDRD
HDRDRERNREREKPRDRERDRERERPDKRKRSPEPKIKDDSSRIEEEEEELKREAERKKV
KKEPLSLEEMVARKRAEEEALSRPKFLTKEEREAEAIRRRQEQIEDVRRRQDEERKARET
MYQDGRRELEQALRQEDPRERDRHRRDREPRENKEDLELERKKQLERDAVNERYLGIVKK
KKKVRRLNDRKFVFDWDAGEDTSVDYNELYINKHLVHFFGRGHFGGLDLKEQKKIQSKFY
GNYIEHRRTQFDKDQELIRMKKEQKKEDKKKWDDRHWSEKNLEQMTERDWRIFREDYNIA
IKGGRIPNPIRRWPESNIKKDILDIIASVGYEDPTPIQRQAIPIGLQNRDIIGVAETGSG
KTLAFLIPLLEWIQSLPKIARLEDADQGPYALVLAPTRELAQQIEEETTKFGGPLGIRTV
AVIGGLSREEQGMKLRMGCEIVIATPGRLVDVLENRYLVLNQCTYVVFDEADKMIDMGFE
PDVQKILKFMPVTNEKPDTEDAEDEDKLLQNFLSKHKYRQTVMFTATMPPAVERMARQYL
RRPAYVYIGSVGKPVERVEQVVYMVTEQEKRKKLLDILKRGITPPVLIFVNQKKGADVLA
RGLEKLGHNATTLHGGKGQEQREHALANLKSGAKDILVATDVAGRGIDIKDVSLVINYDM
AKNIEDYTHRIGRTGRAGKHGKAISFLTKDDSHLFYDLKQLILTSPVSTCPPELANHQEA
QHKPGTVMTKKRREEKIFA
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagacacaggattaagatcacatcgccgagaacggaaagaaagaaaagaaaaa
gagaggagagacagggaacgcgagaggggagacagagacagggaccgtggagaaagagaa
aaagacagggagcactacagagaacgggaaaaggagagaaacagtgaaagagacagagac
catgaccgagatagagaacgtaatcgagaaagggagaagcctcgtgatagagagcgtgac
cgtgaaagagaacgacctgataagagaaaacgatcaccagagccaaagataaaggatgat
agttcaaggatagaggaggaagaggaggaattaaaaagggaagcagaaaggaagaaagtg
aagaaagagcctctttccttagaagagatggtagcaagaaagagagcagaagaggaagcc
cttagccggccaaagtttttgaccaaggaagagagggaagcagaggcaatcaggcgacgt
caagagcagattgaagatgtacgcaggaggcaggatgaggagaggaaagcccgggaaact
atgtatcaggacggtcgtcgagaactggaacaggcattacgacaggaagatccccgggag
cgtgatcgccaccgtcgagaccgagagccaagagagaataaggaggatctcgagttggaa
aggaaaaagcagcttgaaagagatgcagtcaatgagagatatcttggtattgtcaaaaag
aagaaaaaggttcggagacttaatgaccgtaaatttgtgtttgactgggatgctggtgag
gacacatccgtcgactacaatgaactatacatcaataaacatcttgttcatttctttggt
cgtggacactttggtggattagacctgaaggaacaaaagaagattcagtcaaaattctat
gggaattacattgagcatcgtcgtacacagtttgacaaagaccaagagttgattcgcatg
aagaaggagcagaaaaaggaggacaaaaagaaatgggatgaccgacactggagtgaaaag
aacctggaacagatgacagagcgggattggcgtatttttagggaggattataacatagcg
atcaagggaggacgcattcctaatccaattcgaagatggccagagtctaacatcaaaaaa
gatattcttgatattatcgctagtgttggatatgaagatccaacgcctatccaaagacag
gccatccccattggtttacaaaatcgagacattattggcgtagcagagactggttctggt
aagactttagcttttctcattccccttttggaatggattcaatctcttcccaaaattgct
cgtctagaggatgcagaccagggaccatacgctttagttttggctcccactcgtgagctg
gcacagcagattgaggaggaaaccacaaagtttggaggacctctgggtatccgtacagta
gctgtcattggtggcttgtcacgtgaagagcaaggtatgaagctgcgaatgggttgtgaa
attgttattgctactcctggtcgtctagttgatgtacttgaaaaccgctaccttgtgctt
aaccagtgtacatatgttgtttttgatgaggcagataaaatgattgatatgggttttgag
ccagatgttcagaaaattctcaaattcatgccagtgactaatgaaaaaccagatactgaa
gatgctgaagatgaggataaattactacaaaatttcctctcaaaacacaaatatagacag
actgttatgtttacagctacaatgccacctgcagttgaaagaatggccagacagtacctt
cgacgacctgcttatgtgtacattggttctgtgggaaaacctgtagagcgtgtcgaacag
gtcgtgtacatggttactgaacaagagaagcgtaaaaaattgttggatattttgaaacga
ggcataacacccccagtcctcatctttgtaaatcagaagaagggtgccgatgttctggct
cgaggattagagaaattgggtcataatgccactactctccatggtggtaaaggacaagaa
cagcgtgaacatgctcttgcaaacctcaagtctggtgcaaaggatatccttgtggctaca
gatgttgctggtcgtggtattgatattaaggatgtttccctagttattaattatgacatg
gctaagaacattgaggactacacccacagaattggtcgtacaggtcgtgctggaaagcac
ggcaaggccatttctttcttgacgaaggatgactctcatctcttctatgatcttaagcag
ttgattttaacatcaccggtatcaacatgtcccccagagttagctaaccaccaggaagcc
caacacaagcctgggacagttatgacaaagaaacgaagggaagagaaaatatttgcttag
DBGET
integrated database retrieval system
