Panulirus ornatus (ornate spiny lobster): 139759599
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Entry
139759599 CDS
T10834
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03013
Nucleocytoplasmic transport
porn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139759599 (Upf1)
03015 mRNA surveillance pathway
139759599 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porn03019
]
139759599 (Upf1)
Enzymes [BR:
porn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139759599 (Upf1)
5.6.2.5 RNA 5'-3' helicase
139759599 (Upf1)
Messenger RNA biogenesis [BR:
porn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139759599 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
139759599 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
ATPase
NPHP3_N
AAA_16
AAA_22
nSTAND3
SRP54
Herpes_ori_bp
AAA_7
PhoH
AAA_10
Motif
Other DBs
NCBI-GeneID:
139759599
NCBI-ProteinID:
XP_071538007
LinkDB
All DBs
Position
33:complement(22892565..22922803)
Genome browser
AA seq
1121 aa
AA seq
DB search
MSVDAYGPSSQSLTFYDTEEADLLGADTQGSEYEFNLTLGSQTQTQGDPLDKTQPTQSQV
TVNGDVGETEVEKVTETLADLQFEEDDEENAFYTKELPEWACRYCGIHDPASAVMCNVCH
KWFCNGRGNTSGSHIINHLVRAKHKEVSLHKDGLVRDTVLECYACAVKNVFVLGFIPAKA
ESVVVLLCRQPCAAQSSLRDMNWDPEQWKPLINDRALLPWLVRVPSEAEQLRARQITAQQ
INKLEELWKENASATFDDLERPGVDEEPQQVCLRYEDGFQYQNIFGPLVKLEADYDKKLK
ESQTQDKIEVRWDIGLNKKICAYFTLAKTDGDMRLMHGDELRLRYLGDLHKPWSGVGHVI
KIPDNFGEEVGIELKSNVGVPTDCRDKFVVDFVWKSTSFDRMQAALRKFAVDDSSVSPYI
YHRLLGHVEVDELIFRHIHLPKQLSAPNLPTLNNSQQYALKHALQRPLSLIQGPPGTGKT
VTSATIVYQLVKQTGGSVLVCAPSNTAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRSLEDNGELQKLQQLKEETGELSSADEKRYRMLKKQAEKTLLEAADVICCTCVG
AGDPRLARLKFHSILIDESMQATEPECMVPVVLGAKQVILVGDHCQLGPVVMCKKASRAG
LSQSLFERLVVLGIRPFRLTVQYRMHPQLAQFPSNFFYEGSLQNGVADADRTMKGVSFPW
PQADKPQFFYVTSGQEEIAGSGTSYLNRTEASSVEKLVTRFLNSGVKPEQIGVITPYEGQ
RAYLVQYMQYQGPLNQKLYQRLEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLSDPRRL
NVALTRARYGIIIVGNPKVLSKQQGLWNHLLHHFKEKKVLVEGPLNNLKESMMQFSKPKR
LINATNPGSHFMNTAMYDAREAMVPGSMYDRSGPINGSAPPPSPYFRGPQYDMYGRAHDS
LDYISADHSQPGLNNLPVPVGMFMNMAHVPPRFYQQHQQALAQARGGRGGARGGRAASRK
LAKNMGGAGTLQLSQPFSQDPSMQSYSQPGLTQGHLSQGMSGPGLSGLSQGLSQAELSQD
SYMVDQFQSQTDGLLSQDSTYQGDRAFFTPASQTHHFSQPY
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagacgcgtacggcccaagctcacaaagtctcaccttctatgacaccgaggaa
gccgaccttttgggggctgacactcagggctctgagtacgagttcaacctcactctgggc
agtcagacccagacccagggagatccgttagacaagacccaaccaacccagagtcaggtg
acggtgaatggagatgtgggggaaactgaagtagagaaggtgacagagacacttgctgat
ttacaatttgaggaagatgatgaagaaaatgcattctacacaaaggagctgccagaatgg
gcttgccgctactgtgggattcatgatccagcatcagctgttatgtgcaatgtgtgtcac
aaatggttctgcaatggtcgtgggaacacctctgggtcacacatcatcaatcatcttgtt
cgtgcaaagcacaaggaagtaagcctccacaaggatggcctggtacgggacactgttctt
gaatgttatgcttgtgctgtcaagaatgtgtttgtgcttggtttcatcccagctaaggct
gaatcagtggttgttctgttatgcaggcaaccttgtgctgcacagagttcccttcgagac
atgaattgggacccagagcagtggaaacctttaatcaatgaccgagctttgctgccttgg
cttgtgcgtgtaccttcagaagctgagcaactccgtgcacgccagatcactgcacaacag
atcaacaagctggaagagttatggaaagagaatgcttcagcaacctttgatgacttagag
cgtcctggggtggatgaagagccccagcaagtttgcttgagatatgaggatgggtttcag
tatcagaatatttttgggcctttagtaaagttagaagcagactatgataagaaactgaag
gaatcccagacccaggacaaaattgaggtgcgctgggacattggcttgaacaagaaaatt
tgtgcctatttcacacttgccaaaactgatggagatatgcgtttgatgcatggagatgag
cttcgcctcaggtatttgggtgacttgcacaaaccatggtctggggtgggacatgttatc
aagattccagacaattttggagaggaggttgggattgagctaaagtccaatgtgggtgtt
cccacagactgccgagataaatttgtggtggattttgtttggaagtcaaccagctttgat
agaatgcaggcagctttacgcaaatttgctgtagatgattcttctgtgtcaccatatatc
taccaccgactcttgggtcatgtagaagtggatgaactgatattccgccatattcatctt
cctaaacaattgtcagctcctaatctacccaccctgaataattcacagcaatacgccctt
aagcatgccttgcaacggcctctgtcattgatccaaggccctccaggcactggaaaaaca
gtcacatctgccaccattgtatatcagttggtaaagcagacaggtggttctgttttggtg
tgtgcaccatcaaacactgctgttgaccagctcacagagaagattcataagactggactg
aaggttgttcggttgtgtgctaaatcacgtgaggccattgattctccagtttctttcttg
gctttgcataatcagatccgtagtcttgaagataatggtgagcttcagaaattgcagcag
ttgaaagaagagacgggagaactttcatctgcagatgagaagcgctatcgcatgttgaag
aaacaggctgaaaaaactttgctggaggctgctgatgtcatttgctgcacatgtgttggt
gctggtgatcctagactggcccgccttaaattccattccattcttattgatgagtctatg
caggcaactgaacctgaatgcatggttccggttgttctgggtgccaagcaagtcatcctt
gttggtgaccactgccagctgggaccagtagtgatgtgtaagaaggcttcgagggctggc
ctatcccaatctctctttgagcgtttggttgttctgggcattcgaccttttcgcctcact
gtccagtaccgtatgcacccacagctggcccagtttccctccaactttttctatgaggga
tcccttcagaatggtgttgctgatgctgatcgtaccatgaagggtgtaagtttcccatgg
cctcaagcggataaacctcaattcttctatgttacatctggtcaagaggagattgctgga
tcaggtacctcttacttgaaccgcacagaagcctctagcgtggaaaagttggtgacgcgc
ttcctcaactcaggcgtgaagccagaacagattggtgttatcaccccatatgaagggcag
agggcctatttggttcaatacatgcaatatcaaggtcctctgaatcagaagctataccag
cgtttagaggtagcaagtgttgatgctttccaaggtcgggagaaagacctcataatcatg
tcatgcgtgaggtccaatgaacatcaaggtattggctttctgtcggatcctcgtcgactt
aatgttgccctcactcgtgctcgttatggcatcattatagtgggcaatcccaaagttctt
tcaaagcagcaaggcttgtggaatcatctactgcatcactttaaggaaaagaaggtcctg
gtggaaggccctttgaacaatttgaaagagtccatgatgcaatttagcaaacccaaaagg
cttatcaatgccaccaaccctgggtctcattttatgaatacagctatgtatgatgcaagg
gaagccatggtaccaggttccatgtatgaccgctctggtcccatcaatggctcagcacct
cctccctcaccttattttagagggccacagtatgacatgtacggaagagcgcatgactcc
ttagactacatctctgcagaccattctcaaccagggctcaacaacttacctgtaccagtt
gggatgttcatgaatatggctcatgtacccccacgcttttaccagcagcaccaacaggcc
ttagcacaggcacgaggaggccgaggtggtgcgcgtggaggtagagcagcttcaaggaag
cttgctaagaacatgggtggggcaggtactcttcagctctcacaacctttcagtcaggat
ccatcaatgcagagctattctcaaccaggactgacacaggggcatttgtctcagggtatg
tcaggacctggcctgagtggattgtcccaaggactgtctcaggcagagttgtcccaagac
tcctacatggtagaccaattccagagtcagacagatggtcttctctcccaagactctacg
taccagggtgaccgtgcgttctttaccccagcatctcaaacgcaccacttctcacagccg
tactga
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