Panulirus ornatus (ornate spiny lobster): 139761047
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Entry
139761047 CDS
T10834
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139761047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porn03019
]
139761047
03012 Translation factors [BR:
porn03012
]
139761047
Enzymes [BR:
porn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139761047
Messenger RNA biogenesis [BR:
porn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
139761047
Translation factors [BR:
porn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
139761047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
AAA_22
nSTAND3
AAA_14
ATPase
AAA_19
NPHP3_N
NACHT
TsaE
ABC_tran
PhoH
RsgA_GTPase
AAA_16
Motif
Other DBs
NCBI-GeneID:
139761047
NCBI-ProteinID:
XP_071540919
LinkDB
All DBs
Position
3:18329280..18518863
Genome browser
AA seq
1090 aa
AA seq
DB search
MSVDVKQNTPAGLFSSWTCTSFVHLFSVFQTSKLFGFRVRLLAMNSMYGQHNSGNFRDGG
NWRGGGRGRGGRGRGGKGGGGRGGRRGGGPPPGLKGREIGLWYAKRSRERQEKDVNNLPS
ISMNASQVQDVGRMLDSFDDGNDLKFVQPREGVSSSRQPVDDLGKEWDQRISSILKLEFD
EGDHLNAGSSCEGTAGEIDHFSNPDAWMQDCTQKHKGEDKKVPRGETFTQRLETIGESDF
KRAYVANVRGNQLRDLDGLSALRGDQLGLLKREDIDNRLYENMLEQQKNQQYQQMLAIRK
KLPSYKMRDEIVDTIRDNQVVVLSGETGCGKTTQVAQFILEDAIADSQGSTCHIVCTQPR
RISAISVAQRVACERGEELGKSVGYQIRLEATLPRSEGSILFCTTGIVLQWLQGDPLLSR
VSHLILDEIHERDMLSDFLISIAKDLIRVRPDLKIVLMSATLRAEQFSEYYGGCPMLHIP
GFTFPVEEHYLEDVLEITRFRFEEEKHVPVWKRREQKKNQEFEDMIAPYIRNLERKQQYS
CHTLDELFKTTSEELNLDLILELLRHIVCQPAGAVLVFLPGWDKISKLHSMIQDDRMLGG
RNLLVIPLHSLMPTVNQREVFDKPPEGVRKIVLATNIAETSITIDDIVYVIDSGRMKMKN
YDKEANLTTLLPEWVTLANAKQRRGRAGRVQKGVCYHLYTRAREQTLDEYPLPEIQRTRL
EEIILHVKILRLGSVKPFLSKVMMPPDESVVDVSLQMLQAINALDESENLTPLGFHLARL
PVDPLTGRMLLMAAIFSCVRPILTVAASLSFKDPFIIPVGKERAVDDVKKKLSKGTKSDH
ILLVTVYDGWERALQHRQDKHYCWDNFLSSSVLHQLKNMRRQFMGLLHEHKFVSTQNPHA
GVVNRNSENLALVRAIITAGLYPNVARILPNTGRPSPHKPLKIRTAQERRVALHPKSVNE
KDRDFKYPWMVYREKIKSSKVFIFDSSMVPNYPLLFFGEKLNYDLSKGVINVDGFVQVRS
SQHVAHLVQSLRSELDQLLEYKISHPGMTRWEKSSKEGALLQTIVDLISSEKSTEPDPND
FYDDQDDDDY
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttgatgtcaaacaaaacactccggcagggttgttctcttcttggacatgtact
tcatttgtccatctattttccgtgttccaaacaagtaaactgtttggatttcgtgtaaga
ttgctggctatgaacagcatgtatggacaacataatagtggtaactttagggatggtggt
aactggaggggaggaggtagaggaagaggaggcagaggaagaggaggtaaaggtggggga
ggaagaggaggccgtagaggaggaggtccaccacctggactgaagggcagagaaattggt
ctctggtatgctaagcggtctcgtgaacgacaagagaaggatgtaaacaacttaccatct
atctccatgaatgcgagtcaggttcaagatgtgggtcgtatgctagattcctttgatgat
ggaaatgacttaaagtttgtccaacccagagaaggtgtaagttcatcccgacaacctgta
gatgatttaggaaaggagtgggaccaacgaatatcatccattttaaaactggagtttgat
gaaggagaccatttgaatgctggaagtagctgtgaaggtactgcaggcgaaattgaccac
ttctctaatccagatgcatggatgcaagattgcacacagaaacataaaggtgaagacaaa
aaggtgcctcgtggtgagacttttacacaaagacttgagactattggtgaatcagacttc
aaacgagcatacgtggccaatgttcgtggaaatcagctgcgtgacttagatggtctttct
gctttaagaggagaccagttggggctactaaagagagaagacatagataacagactttat
gagaatatgttagagcagcagaaaaatcaacaatatcagcagatgttggcgatacgtaaa
aaactaccatcatacaagatgagagatgaaattgttgatacaattcgagataaccaagtg
gtggtacttagtggtgaaacaggttgtggtaaaactacacaagttgctcagttcattttg
gaagatgccattgctgacagccaaggatctacctgccatattgtttgtacacaacctaga
cgtatttctgccatttctgttgcacagcgtgttgcttgtgaacgtggtgaggagttggga
aagagtgttggctaccagatacgcttagaagccaccctcccacgctctgagggctccatc
ttattctgtacgactgggattgtgctgcagtggttgcaaggagacccacttctttcaaga
gtatcgcaccttatcctagatgagatacatgagagggacatgttgtcagacttcttgatc
tctattgccaaagacctcatcagagttcgcccagatctgaagattgtgttgatgagtgca
acattgagagctgaacagttctcagaatactatggagggtgcccaatgctgcatatccca
ggctttacttttcctgttgaagagcactaccttgaagatgttttagaaattaccagattt
agatttgaagaggaaaaacatgttccagtttggaaaagacgagagcagaagaaaaaccaa
gaatttgaggatatgattgcaccatacattagaaatctagagcgaaaacaacagtattca
tgccacacccttgatgaactttttaagacgacaagtgaagaattaaatctagacttgata
ctggagttgctgcgtcacattgtttgtcagcctgcaggtgctgtccttgtatttcttcct
ggttgggacaagatatcaaagttacactcgatgattcaggatgacagaatgttgggtgga
cgtaacttactagtgatcccactacactctctgatgcccactgttaaccagcgtgaagta
tttgataaaccaccagaaggtgtgcgaaagattgtcctagcaaccaacattgcagaaaca
agtataactatagatgacattgtgtatgttattgatagtggacgtatgaaaatgaaaaat
tatgataaagaggctaatttgacaaccttgctaccagaatgggtcactcttgccaatgca
aaacagcgtcgtggtcgggcaggacgtgtacagaaaggtgtgtgttaccatctgtacacc
cgtgctagggaacaaaccttggatgaatatcctctgcctgaaattcaacgtactcgtctt
gaggagattattcttcatgttaagatcttacgattaggttctgtcaagccattcctttca
aaagtgatgatgcctcctgatgagtctgttgtggatgtatcactgcagatgcttcaagca
atcaatgcactggatgagagtgaaaacttgactcctcttggtttccatctggcccgcctt
ccagtggatccactgactggtcgcatgcttctcatggctgcaatattttcctgtgttaga
cctatcttgacggtagcagcatctctctcctttaaggatccattcataattccagtgggc
aaagaacgtgcagttgatgatgtcaagaaaaagcttagcaaaggtactaaaagtgaccat
atacttctagtcacagtttatgatggctgggaacgtgcattgcagcaccgtcaagacaaa
cattactgctgggacaatttcctttcctcctctgtattacatcaactcaagaatatgcgg
agacagtttatgggattactgcatgaacacaaatttgtcagcacacagaaccctcatgca
ggtgtggttaatcgtaactctgaaaaccttgccttggtgcgagccatcatcacagctggc
ctttacccaaatgttgccagaatattgccgaacacaggacgtccaagtccccataaacct
cttaagatacgaacagcacaggaacgacgagtggcactacatcctaagtcagtaaatgaa
aaggatagagatttcaaatatccatggatggtatacagagaaaaaatcaagtcatccaag
gtcttcatctttgacagctctatggtgccaaactatccccttcttttctttggagagaaa
ctaaactatgacctgagtaaaggagtgataaatgttgatggatttgttcaggttcgaagc
tcacaacatgttgctcatttagtgcagagtttacgtagcgaattagaccaacttttggaa
tacaagattagccatccaggtatgacaagatgggagaaatccagtaaagaaggtgctcta
ttgcaaacaattgtagaccttatctccagtgagaaaagtactgaaccagacccaaatgat
ttttatgatgaccaagatgatgatgattattaa
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